| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1780 |
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| Symbol | |
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| ID | 4172028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2139095 |
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| End bp | 2140852 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054790 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_661355 |
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| Protein GI | 109898100 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0810264 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCATA CTTTACCTAC GCAAAATGTG TTCAAACGCT TCGCCGTTTA CCTAAAAGAC
TTCAAGCTTG CCTTTGGTGT AGCGATTATT GGCATGGTCG GGTACTCCCT GATCGATGCT
TATGTGATTT CCTTGCTGCA ACCTATTATT GATGGCAATG GGGGCAAGTG GGATTACGAT
TATCTGCGCA TAGCTGCTTA TTTTGTTATC CCCGTTTTTA TCGCCCGTGG CATATTTAAT
TTTATGGGTA CCTATACCTT GTCTTGGATA TCAAGCCAGG TGGTGATGAA GATGCGCGAG
CAATTGTTTC ATCAGTACAT GCATTTGCCC GTTGAGTTTC ACGATCATCA TCCCTCTGGG
CAGCTTATCT CAAAAGTTAT TTACGATACC GAGCAAGTCG CTGGCGCAGC AGGCAAAGCG
TTCTTAACCT TGGTCAGAGA AGGCGCGTTG GTCTTTGGCT TATTATTTTG GATGTTCTAT
CATTCTTGGC AGTTGTCGTT AGTCTTTATT TTGATTGGCC CGCTTGTGGC CATGATTGTA
TCTGTTGTGA GCAAGCGATT TCGTCTGGTG AGTAAAAATA TTCAGCAAGC CATGGGTAAC
TTAACATCCT CTGCAGAGCA AATTATTAAA GGCCACAAAG TGGTATTGAT GTTTGGCGGG
CAAGATTTAG AAGCCTCGCG TTTCGCTAAA AAGAACAACA ATAATCGTCA GCAGAATATG
AAGCTGGTAA TTGCGCAAAT TCTCAGTGTG TCATCGATTC AAGTGATTGC CTCTGTTGCA
CTGGCCGTCG TGTTATACAT CTCTAGTAAA CCGAATTTCA TCACTGATTT AACTCCTGGA
ACGTTTGTAA CCGTCGTGGT GGCTATGACC ATGCTACTTA AACCGTTGAA ACAGCTCACC
ACGGTAAACA GTGAGTTTCA AAAAGGCATG GCTGCATGCG TGAGTATCTT CTCAGTGCTA
GACAATGCTA TAGAAAAAGA TACCGGCAGC AAAGTGCTAG ACAAAGCCAA GGGCAAATTA
GAGTTCAGAG ACGTGACCTT CCATTATCCT AATAAGGAAG AGGCCGCGTT ATCGGATATG
TCATTCACGG TAGAGCCAGG GAAAACCTTT GCTCTGGTAG GGCGTTCAGG CAGTGGTAAA
TCAACCATAT CGAGCCTATT AACTCGTTTT TATGATGCGC AGCAAGGGAC TATCTTACTC
GACGATGTGC CATTGCAAGA TTTCAAACTG AAGGATTTAC GTCGCCAGTT TGCGCTAGTG
TCTCAGCACG TCACACTTTT TAACGATACG ATTGCTAATA ACATTGCTTA CGGCTCAGAA
GGGCGCGTTA CCCCCGAGCA AGTGTTGGCT GCGGCAAAAA CTGCCCACGC TTTAGAATTT
ATAGAGCAGT TACCCAACGG CATGGAAACA CTCATCGGTG AAAATGGCTT GATGCTGTCT
GGCGGACAAC GTCAACGTTT GGCCATTGCC CGTGCTGTGC TGCTTGATGC ACCTGTGCTT
ATTCTTGATG AGGCAACATC GGCGCTTGAT ACGGAGTCAG AGCGATTGAT CCAGGATGCG
CTCGAAACGC TGCAGCAAGA TCGTACCAGC ATTGTTGTGG CTCATCGCTT ATCTACCATT
GAAAGTGCCG ATCAGATATT GGTTATTGAG AGAGGGCGTA TTTTAGAGCA GGGGGATCAT
GCTTCGTTAT TATCCGAGGA CGGCGCGTAT GCTCAGCTAC ATAAATTACA ATTCGGCGAC
GGGCAAACTG ACGCGTGA
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| Protein sequence | MTHTLPTQNV FKRFAVYLKD FKLAFGVAII GMVGYSLIDA YVISLLQPII DGNGGKWDYD
YLRIAAYFVI PVFIARGIFN FMGTYTLSWI SSQVVMKMRE QLFHQYMHLP VEFHDHHPSG
QLISKVIYDT EQVAGAAGKA FLTLVREGAL VFGLLFWMFY HSWQLSLVFI LIGPLVAMIV
SVVSKRFRLV SKNIQQAMGN LTSSAEQIIK GHKVVLMFGG QDLEASRFAK KNNNNRQQNM
KLVIAQILSV SSIQVIASVA LAVVLYISSK PNFITDLTPG TFVTVVVAMT MLLKPLKQLT
TVNSEFQKGM AACVSIFSVL DNAIEKDTGS KVLDKAKGKL EFRDVTFHYP NKEEAALSDM
SFTVEPGKTF ALVGRSGSGK STISSLLTRF YDAQQGTILL DDVPLQDFKL KDLRRQFALV
SQHVTLFNDT IANNIAYGSE GRVTPEQVLA AAKTAHALEF IEQLPNGMET LIGENGLMLS
GGQRQRLAIA RAVLLDAPVL ILDEATSALD TESERLIQDA LETLQQDRTS IVVAHRLSTI
ESADQILVIE RGRILEQGDH ASLLSEDGAY AQLHKLQFGD GQTDA
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