| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1776 |
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| Symbol | |
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| ID | 4172024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2133682 |
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| End bp | 2135715 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054786 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_661351 |
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| Protein GI | 109898096 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.19429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAATG CTCTGTCGCC TGCTCAAAGG CTGACGCAAA TTATTAACAC CATCAACGAG
TACAATTACC AATACTACGT ACAGGACAAC CCATCCGTGC CTGATGCCGA ATATGATCGC
TTAATGCGTG AATTGCTGGA CATTGAAAAT AACCACCCTG ATCTACGCAG CCCGGATTCT
CCCTCGCAAA AAGTGGGCGG AGCAGCTCTT AGCGCGTTCG AACAGGTTGA GCACGAAGTA
CCCATGTTGT CTCTTGATAA TGCGTTCGAT GAAGATGACA TGCAGGCATT TGAAAAGCGC
ATCAAAGACC GTTTAAAGAT AAGCAGTGAA ATTAGTTTTA GCTGCGAGCC TAAACTTGAT
GGCCTAGCGG TGAGTATTTT GTACGAAAAC GGGCAGTTAG TTCGCGCTGC CACACGGGGC
GATGGTCGAG TAGGTGAAAA CATCACGACT AACGTACGTA CCATTGCTAA CGTGCCTTTG
CGCTTGCGAG GAGAGAACTT TCCGAGCCGA TTAGAAGTGC GCGGTGAAGT CATCATGACC
CGAGCAGGCT TCGTTACTTT AAATGAAGCA CAGATTAAAA AGGGTAAAAA ACCGTTTGTT
AACCCGAGAA ATGCCGCTGC CGGGAGTTTG CGTCAGCTTG ACCCGAAGAT CACCGCAGCA
CGACCTTTGC TCTTTTACAG TTACTCGCTG GGCTTGGTCG AAAACGAACA ACAACCTCTG
GGCGAAACGC ATTCATCGCG CTTAGCTCAG TTAAGCGAAT GGGGCCTACC TTTGAGCAAA
GAGCTTGAGG TGACGCAGGG CGCAACACAG TGCTTAACCT ATTTTCATAA GATTGGAGAG
CTGCGAAGCC AGCTAAGCTA TGACATAGAC GGCGTAGTAT TCAAAGTTGA TAATATTGCC
ATGCAGCAAG AGCTGGGTTT TGTAGCTCGT GCGCCGCGCT GGGCGATAGC CCATAAGTTT
CCTGCGCAAG AAGAGATGAG CACCTTGCTC GACGTTGAGT TTCAAGTCGG CAGAACCGGT
GCAATTACGC CAGTAGCAAG GCTCGAACCG ACGTTTGTTG GAGGCGTGAC GGTTTCTAAC
GCTACGCTGC ATAATCAAGA TGAAATCAAT CGTTTAGGTA TCAAGATTGG TGACAGCGTC
ATTATTCGCC GAGCAGGAGA TGTTATCCCG CAGATAGTGG CGATAGTGGC AGATAAGCGC
CCAGATGACG CTAAAGACAT TGTATTCCCT GAAAGTTGCC CGGTCTGTGA TTCAGCGATT
GAAAAACTAG AAGGCGAAGC CGTGGCTCGC TGCACGGGAG GCTTGTACTG CAAGGCTCAG
CGTAAAGAAG CCATGAAGCA TTTTGCATCA CGCAAAGCGC TTGACGTGGA TGGCCTCGGG
GATAAATTAA TTGAGCAATT AGTCGACGCT GAAATGGTTA AAAGCCCGGC TGATTTTTTT
GCTCTGGATA TCGCTCCTTT ATCAAGTATG GAGCGAATGG GCGAAAAATC GGCGGTAAAT
TTAGTTAACG CCTTAGAAAA AAGCAAAAAA ACCACATTAG CTAAATTCTT ATATTCTTTA
GGCATCCGTG AAGTGGGCGA GGCGACAGCG CAGAATTTAG CACAACACTT TTTAACGTTA
GAGGCTATTG AGCAAGCAGA TCTGGACGCG CTACAAGCAG TATCGGATGT CGGTGTTATT
GTGGCTCAGC ACGTGTTTAA CTTTTTCAAG GAAGAGCACA ACCTCGAAGT GATTAGTGCA
CTGTTAGAGG CCGGTGTACA TTGGCCAAAA ATCGAAAAGC TAGCATTAGA TGAGTTGCCG
CTTGCAGGGC AGGTATACGT GCTCACCGGG ACGTTAAATG TGATGGACCG AAACTCGGCT
AAAGCGAAGT TGCAAAGCTT GGGAGCAAAA GTATCGGGCA GTGTATCGGC TAAAACCGAT
TGCTTAGTGG CCGGTGAAAA GGCCGGCTCT AAGTTAACTA AAGCTCAGGA TTTGGGGGTA
AAAGTCATGA ACGAAGATGA CATGTTAGCC ATGTTCGCCG ACCTTGAAGG TTAA
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| Protein sequence | MSNALSPAQR LTQIINTINE YNYQYYVQDN PSVPDAEYDR LMRELLDIEN NHPDLRSPDS
PSQKVGGAAL SAFEQVEHEV PMLSLDNAFD EDDMQAFEKR IKDRLKISSE ISFSCEPKLD
GLAVSILYEN GQLVRAATRG DGRVGENITT NVRTIANVPL RLRGENFPSR LEVRGEVIMT
RAGFVTLNEA QIKKGKKPFV NPRNAAAGSL RQLDPKITAA RPLLFYSYSL GLVENEQQPL
GETHSSRLAQ LSEWGLPLSK ELEVTQGATQ CLTYFHKIGE LRSQLSYDID GVVFKVDNIA
MQQELGFVAR APRWAIAHKF PAQEEMSTLL DVEFQVGRTG AITPVARLEP TFVGGVTVSN
ATLHNQDEIN RLGIKIGDSV IIRRAGDVIP QIVAIVADKR PDDAKDIVFP ESCPVCDSAI
EKLEGEAVAR CTGGLYCKAQ RKEAMKHFAS RKALDVDGLG DKLIEQLVDA EMVKSPADFF
ALDIAPLSSM ERMGEKSAVN LVNALEKSKK TTLAKFLYSL GIREVGEATA QNLAQHFLTL
EAIEQADLDA LQAVSDVGVI VAQHVFNFFK EEHNLEVISA LLEAGVHWPK IEKLALDELP
LAGQVYVLTG TLNVMDRNSA KAKLQSLGAK VSGSVSAKTD CLVAGEKAGS KLTKAQDLGV
KVMNEDDMLA MFADLEG
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