Gene Patl_1756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1756 
Symbol 
ID4173685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2100863 
End bp2104363 
Gene Length3501 bp 
Protein Length1166 aa 
Translation table11 
GC content48% 
IMG OID638054766 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_661331 
Protein GI109898076 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGCATC TGGTTCAGTC TAATAAAATG GAAAGTCTCG CCGCTTATCT CATCGGGTGG 
TTAGGCGAGA GTAAAAGCAG CCTAGATGAT ATCTTTTCCC CCGACGTGGT GTTAGTGCAA
AGCCCCGGTA TGGCACAGTG GCTAAAAATA GAAATTGCCC AGGCATTGGG TATTTCTGCC
AATATCGATT TCCCGTTACC CTCAAGCTAT ATCTGGCAAT TATACAAAGG CCACGTAAAC
GATTTACCTG AGCAGTCTGC CTTTACTAAA GACAACATGA CGTGGAAGCT CATGAGCATA
TTGCCTGAAA TGAGTGATAG AACTGAATTT GCCAGCATTG CCCAGTATTT AGATGATCAA
CAGCCGCTTA AGCTTTATCA GTTATGCCAA AAAATAGCCG ATATTTACGA TCAATATTTG
GTCTATCGCC CAGAGTGGAT CCTGGCTTGG GAACAAGGCG AAAATAACGT AGCCGATACC
GACGTGTCCG CCCAACCTTG GCAACCTATT TTATGGCGAG CTTTGGTTGA ATATGCCAAA
GAGCTGGATG AGTCTCCTTA TCATAGGGCG AATTTGCATA CACGCTTAAT GGCCGAGCTT
GAGGACACTA AAAGCAGCAA AGATGAGCTG AAACCCTTGT TTGTGTTTGG CCTGTCAGCG
ATGCCTGTGC AACAACTTGA AATTTTCTCC GCGTTAGCGA AAAGTCGCGA CGTGATCATC
TTTTGGTTTA ACCCCAGCGC CCATTACTGG GGCGATATAG TAGACAACAA ACAAGTACTG
CAAGCCAAAT TGCAAAGCTT ACTCGCTCAA GCAAGTGAAG ATGCCCAAAG TGGCTTAAGC
GGTATGGATG ATTACCTATT GGTTGGCAAC CCGTTGCTCG CCTCTTGGGG CAAGCAAGGG
CGAGACTACC AAGACATGAT CTTGGGCTTA GAGGTTGAAT TGCATGATGC GTTTATCGAG
CAAGAGCCCG AAAGCTTGCT TGAACATATG CAGCACGAAG TATTGGCGTT AACTCATCGC
GGGGCGATAG AGCCACTACC CGCACAAGAG CTGCTAACAA ACGGTGAAGA ATACCCTAAG
ATACCTCTGG CTGAAGACGA CATGACCTTG CAAGTACATG CGTGTCATTC AGCAGTACGT
GAGCTCGAAG TCTTACATGA CCAGCTATTG CACCTTTTTG CTGATCACCC TGAGCTACAC
CCGGGGGATG TGATTGTAAT GATGCCGGAC GTGGCAAGCT ATGCACCGAT CATTGATGGT
GTATTTGGCG GCACAGACAA AGCGCTGCAT ATTCCTTATG CTATTTCCGA TCGCAACGCC
CAGCAAGAGT CGCCTCTACT CAATAGCTTT ATTCAACTGA TGTCGCTACA TCAAAGCCGG
ATCGGTTTAT CCGATGTACT GGCCTTGTGT GAAGTGCCAG CAGTACAGCG AAAATTTGAT
ATCACCCCAG AGGAATTTGA CTTATTAAGT GTATGGCTAG CTGATGCAGG TGTGCGTTGG
GGCTGGGATG GCCAAGATAA AACACGCTGG GCATTGCCCA ACGAACCGCA AAATACCTGG
TTGTTTGGTT TACAACGTTT GTTGGCCGGC TATGCCATGG GCGGTGAAAG CATGTTTGAT
GATGCTCATG AGCCAATTGC ACCTTATGAA CACATCGAAG GCCAGCACGT TGTGGCTTTA
GGTAAGTTTT ATTTGTTCAG TCGCGAGCTT GGCAACGCGT TAGCCTTTTG CCAAAGTGCG
GCCAGTTTGC ATGCGAAAAT CAAAGGTGCT CTGTCACTCA TTGAACAGCT GTATTTGCCT
GACGATGATG ACCAAACGTA TGTGCTACAA CTGCGCCAAT CACTGGAGCA AATGACAGTA
CACGAGCATC AATTCAGTGG TGAAATTGTG CATGATGTTT TCCTCGCTGA GCTAGAGCAA
AGTTTATCCA GCAAAGGCGT AGGCCAGCGC TTTTTAGCCG GTTATGTGAA TTTTTGTACC
TTAATGCCCA TGCGCAGTGT GCCGTTTAAA GTGGTGTGCT TGCTTGGTTT AAACGATGGT
GATTACCCAA GGCAAGTGGT GCCGGTTGGT TTCGATTTAA TGCGCATCGG CAAAGGGCGT
AGGGGAGACC GCTCTCGCAG GCTAGATGAC AGATACCTGT TTTTAGAGGC CATTTTATCT
GCGCGTAAGC GACTGTATTT AAGTTTTCAG GGCTTTAGCG CTAAAGATAA CTCGCCGCGT
AGCCCATCAA TTTTGCTTAG CGAGTTACTT GAGTACACAC AACAAACCTT CTGCTTGGCA
GGTGATGAGA GCTTAGAAAC CAAAACATGC GCCGATAATT TAGCAAAGCA TATTTATCAT
GAGCATGCAT TGCAGCCATT TAATCCTGTG TATTTTGCGA CTAAACGCGA TGCCCACGAA
GAGGAACCGT TGCCAAGCGC GATGGCTAGT TTTCAAACTC CTTGGCTGGC ATTAGCGCAG
CAGCTGACAG ATGGCAGTGT GCACAGTGAT AAAGAAGTGG ATTTTTGTCC TGCGCCGTTA
TTTTCCTTGC CTGAGCTTGC TCAAGTGACA GAGGTCGAGT TAGACGAATT GTTGATATTC
TTTAGCAATC CCGCGAAGGC GTTTTTCAGC CAGCGCTGGC AAACCCGTTT GACCCGTGTT
TATGACGTTC AAAGTGACGA TGAGCCGTTT GAGCTTGATG CGTTGTCGCG CTATGTGTTG
AACGAGCGTT TTGTCACCAC GCAGCAACAG GATTGGACAA CGCGTTTACG GGCAGAGGGT
AAATTGCCCA CAGGAAATAT TGCCGACATA AGTTTGCAGC CCATTCGTAA ACAATCCCGA
GCGTTAATTG ATGCGTTGGT GGCATTGATT GGCGGGCCGC TGGATGAGGT GCCGCCCACG
CGAGCAGAAG TTAACTTTGA GTTGAGCTAC TTGTTGGATA TTTCACCCGT CCCGGCAAGT
GAACTAAATG CCAACACGAA CTCATCAACA CAAAATTCGG TGTCAGCAAC AAGTACTCAA
CGTATTCAGA TAACCGGCTG GGTAGACAAT CTATACGGTG GCAATTTGGT GCTATGGCGA
CCGGGCAAAG TCAAAGGCAA TAACGTATTG CAACTATGGC TAACCTGGTT AGCCCTGTGT
GCTAACGGCA GTGTGGCAAA ACACCAACGC GCCTATTACA TTGGCGTGGA GGATAAAGAG
CCCTTTAGCA TTGGTGCTGT CGATAAAGAT GAAGCGAAAA CCCAACTGGC GATATTCATA
CGTTATTGGC GATTAGGCCA GCTGCAGGTT TTACACTTTT ATCCTAAAAC CGCTTACGAA
TGGCTTAGTG TCGGTGATGA AGCAAAAGCA CTGATGAAGG CGAAAAACGC TTTTTATGGC
AGCTATTTCG CCAAAGGAGA AGGGGAAGAG CCACATATTC GCCGGGTTTG CCCAGATCTA
AACCAGCACT TCTGTGCATT CAGTGAAGTC AGCCATGCTT TATTTGACCC GCTGTTTGAC
GCATTGGGAG AGGCCTCATG A
 
Protein sequence
MLHLVQSNKM ESLAAYLIGW LGESKSSLDD IFSPDVVLVQ SPGMAQWLKI EIAQALGISA 
NIDFPLPSSY IWQLYKGHVN DLPEQSAFTK DNMTWKLMSI LPEMSDRTEF ASIAQYLDDQ
QPLKLYQLCQ KIADIYDQYL VYRPEWILAW EQGENNVADT DVSAQPWQPI LWRALVEYAK
ELDESPYHRA NLHTRLMAEL EDTKSSKDEL KPLFVFGLSA MPVQQLEIFS ALAKSRDVII
FWFNPSAHYW GDIVDNKQVL QAKLQSLLAQ ASEDAQSGLS GMDDYLLVGN PLLASWGKQG
RDYQDMILGL EVELHDAFIE QEPESLLEHM QHEVLALTHR GAIEPLPAQE LLTNGEEYPK
IPLAEDDMTL QVHACHSAVR ELEVLHDQLL HLFADHPELH PGDVIVMMPD VASYAPIIDG
VFGGTDKALH IPYAISDRNA QQESPLLNSF IQLMSLHQSR IGLSDVLALC EVPAVQRKFD
ITPEEFDLLS VWLADAGVRW GWDGQDKTRW ALPNEPQNTW LFGLQRLLAG YAMGGESMFD
DAHEPIAPYE HIEGQHVVAL GKFYLFSREL GNALAFCQSA ASLHAKIKGA LSLIEQLYLP
DDDDQTYVLQ LRQSLEQMTV HEHQFSGEIV HDVFLAELEQ SLSSKGVGQR FLAGYVNFCT
LMPMRSVPFK VVCLLGLNDG DYPRQVVPVG FDLMRIGKGR RGDRSRRLDD RYLFLEAILS
ARKRLYLSFQ GFSAKDNSPR SPSILLSELL EYTQQTFCLA GDESLETKTC ADNLAKHIYH
EHALQPFNPV YFATKRDAHE EEPLPSAMAS FQTPWLALAQ QLTDGSVHSD KEVDFCPAPL
FSLPELAQVT EVELDELLIF FSNPAKAFFS QRWQTRLTRV YDVQSDDEPF ELDALSRYVL
NERFVTTQQQ DWTTRLRAEG KLPTGNIADI SLQPIRKQSR ALIDALVALI GGPLDEVPPT
RAEVNFELSY LLDISPVPAS ELNANTNSST QNSVSATSTQ RIQITGWVDN LYGGNLVLWR
PGKVKGNNVL QLWLTWLALC ANGSVAKHQR AYYIGVEDKE PFSIGAVDKD EAKTQLAIFI
RYWRLGQLQV LHFYPKTAYE WLSVGDEAKA LMKAKNAFYG SYFAKGEGEE PHIRRVCPDL
NQHFCAFSEV SHALFDPLFD ALGEAS