Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1756 |
Symbol | |
ID | 4173685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2100863 |
End bp | 2104363 |
Gene Length | 3501 bp |
Protein Length | 1166 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638054766 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_661331 |
Protein GI | 109898076 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGCATC TGGTTCAGTC TAATAAAATG GAAAGTCTCG CCGCTTATCT CATCGGGTGG TTAGGCGAGA GTAAAAGCAG CCTAGATGAT ATCTTTTCCC CCGACGTGGT GTTAGTGCAA AGCCCCGGTA TGGCACAGTG GCTAAAAATA GAAATTGCCC AGGCATTGGG TATTTCTGCC AATATCGATT TCCCGTTACC CTCAAGCTAT ATCTGGCAAT TATACAAAGG CCACGTAAAC GATTTACCTG AGCAGTCTGC CTTTACTAAA GACAACATGA CGTGGAAGCT CATGAGCATA TTGCCTGAAA TGAGTGATAG AACTGAATTT GCCAGCATTG CCCAGTATTT AGATGATCAA CAGCCGCTTA AGCTTTATCA GTTATGCCAA AAAATAGCCG ATATTTACGA TCAATATTTG GTCTATCGCC CAGAGTGGAT CCTGGCTTGG GAACAAGGCG AAAATAACGT AGCCGATACC GACGTGTCCG CCCAACCTTG GCAACCTATT TTATGGCGAG CTTTGGTTGA ATATGCCAAA GAGCTGGATG AGTCTCCTTA TCATAGGGCG AATTTGCATA CACGCTTAAT GGCCGAGCTT GAGGACACTA AAAGCAGCAA AGATGAGCTG AAACCCTTGT TTGTGTTTGG CCTGTCAGCG ATGCCTGTGC AACAACTTGA AATTTTCTCC GCGTTAGCGA AAAGTCGCGA CGTGATCATC TTTTGGTTTA ACCCCAGCGC CCATTACTGG GGCGATATAG TAGACAACAA ACAAGTACTG CAAGCCAAAT TGCAAAGCTT ACTCGCTCAA GCAAGTGAAG ATGCCCAAAG TGGCTTAAGC GGTATGGATG ATTACCTATT GGTTGGCAAC CCGTTGCTCG CCTCTTGGGG CAAGCAAGGG CGAGACTACC AAGACATGAT CTTGGGCTTA GAGGTTGAAT TGCATGATGC GTTTATCGAG CAAGAGCCCG AAAGCTTGCT TGAACATATG CAGCACGAAG TATTGGCGTT AACTCATCGC GGGGCGATAG AGCCACTACC CGCACAAGAG CTGCTAACAA ACGGTGAAGA ATACCCTAAG ATACCTCTGG CTGAAGACGA CATGACCTTG CAAGTACATG CGTGTCATTC AGCAGTACGT GAGCTCGAAG TCTTACATGA CCAGCTATTG CACCTTTTTG CTGATCACCC TGAGCTACAC CCGGGGGATG TGATTGTAAT GATGCCGGAC GTGGCAAGCT ATGCACCGAT CATTGATGGT GTATTTGGCG GCACAGACAA AGCGCTGCAT ATTCCTTATG CTATTTCCGA TCGCAACGCC CAGCAAGAGT CGCCTCTACT CAATAGCTTT ATTCAACTGA TGTCGCTACA TCAAAGCCGG ATCGGTTTAT CCGATGTACT GGCCTTGTGT GAAGTGCCAG CAGTACAGCG AAAATTTGAT ATCACCCCAG AGGAATTTGA CTTATTAAGT GTATGGCTAG CTGATGCAGG TGTGCGTTGG GGCTGGGATG GCCAAGATAA AACACGCTGG GCATTGCCCA ACGAACCGCA AAATACCTGG TTGTTTGGTT TACAACGTTT GTTGGCCGGC TATGCCATGG GCGGTGAAAG CATGTTTGAT GATGCTCATG AGCCAATTGC ACCTTATGAA CACATCGAAG GCCAGCACGT TGTGGCTTTA GGTAAGTTTT ATTTGTTCAG TCGCGAGCTT GGCAACGCGT TAGCCTTTTG CCAAAGTGCG GCCAGTTTGC ATGCGAAAAT CAAAGGTGCT CTGTCACTCA TTGAACAGCT GTATTTGCCT GACGATGATG ACCAAACGTA TGTGCTACAA CTGCGCCAAT CACTGGAGCA AATGACAGTA CACGAGCATC AATTCAGTGG TGAAATTGTG CATGATGTTT TCCTCGCTGA GCTAGAGCAA AGTTTATCCA GCAAAGGCGT AGGCCAGCGC TTTTTAGCCG GTTATGTGAA TTTTTGTACC TTAATGCCCA TGCGCAGTGT GCCGTTTAAA GTGGTGTGCT TGCTTGGTTT AAACGATGGT GATTACCCAA GGCAAGTGGT GCCGGTTGGT TTCGATTTAA TGCGCATCGG CAAAGGGCGT AGGGGAGACC GCTCTCGCAG GCTAGATGAC AGATACCTGT TTTTAGAGGC CATTTTATCT GCGCGTAAGC GACTGTATTT AAGTTTTCAG GGCTTTAGCG CTAAAGATAA CTCGCCGCGT AGCCCATCAA TTTTGCTTAG CGAGTTACTT GAGTACACAC AACAAACCTT CTGCTTGGCA GGTGATGAGA GCTTAGAAAC CAAAACATGC GCCGATAATT TAGCAAAGCA TATTTATCAT GAGCATGCAT TGCAGCCATT TAATCCTGTG TATTTTGCGA CTAAACGCGA TGCCCACGAA GAGGAACCGT TGCCAAGCGC GATGGCTAGT TTTCAAACTC CTTGGCTGGC ATTAGCGCAG CAGCTGACAG ATGGCAGTGT GCACAGTGAT AAAGAAGTGG ATTTTTGTCC TGCGCCGTTA TTTTCCTTGC CTGAGCTTGC TCAAGTGACA GAGGTCGAGT TAGACGAATT GTTGATATTC TTTAGCAATC CCGCGAAGGC GTTTTTCAGC CAGCGCTGGC AAACCCGTTT GACCCGTGTT TATGACGTTC AAAGTGACGA TGAGCCGTTT GAGCTTGATG CGTTGTCGCG CTATGTGTTG AACGAGCGTT TTGTCACCAC GCAGCAACAG GATTGGACAA CGCGTTTACG GGCAGAGGGT AAATTGCCCA CAGGAAATAT TGCCGACATA AGTTTGCAGC CCATTCGTAA ACAATCCCGA GCGTTAATTG ATGCGTTGGT GGCATTGATT GGCGGGCCGC TGGATGAGGT GCCGCCCACG CGAGCAGAAG TTAACTTTGA GTTGAGCTAC TTGTTGGATA TTTCACCCGT CCCGGCAAGT GAACTAAATG CCAACACGAA CTCATCAACA CAAAATTCGG TGTCAGCAAC AAGTACTCAA CGTATTCAGA TAACCGGCTG GGTAGACAAT CTATACGGTG GCAATTTGGT GCTATGGCGA CCGGGCAAAG TCAAAGGCAA TAACGTATTG CAACTATGGC TAACCTGGTT AGCCCTGTGT GCTAACGGCA GTGTGGCAAA ACACCAACGC GCCTATTACA TTGGCGTGGA GGATAAAGAG CCCTTTAGCA TTGGTGCTGT CGATAAAGAT GAAGCGAAAA CCCAACTGGC GATATTCATA CGTTATTGGC GATTAGGCCA GCTGCAGGTT TTACACTTTT ATCCTAAAAC CGCTTACGAA TGGCTTAGTG TCGGTGATGA AGCAAAAGCA CTGATGAAGG CGAAAAACGC TTTTTATGGC AGCTATTTCG CCAAAGGAGA AGGGGAAGAG CCACATATTC GCCGGGTTTG CCCAGATCTA AACCAGCACT TCTGTGCATT CAGTGAAGTC AGCCATGCTT TATTTGACCC GCTGTTTGAC GCATTGGGAG AGGCCTCATG A
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Protein sequence | MLHLVQSNKM ESLAAYLIGW LGESKSSLDD IFSPDVVLVQ SPGMAQWLKI EIAQALGISA NIDFPLPSSY IWQLYKGHVN DLPEQSAFTK DNMTWKLMSI LPEMSDRTEF ASIAQYLDDQ QPLKLYQLCQ KIADIYDQYL VYRPEWILAW EQGENNVADT DVSAQPWQPI LWRALVEYAK ELDESPYHRA NLHTRLMAEL EDTKSSKDEL KPLFVFGLSA MPVQQLEIFS ALAKSRDVII FWFNPSAHYW GDIVDNKQVL QAKLQSLLAQ ASEDAQSGLS GMDDYLLVGN PLLASWGKQG RDYQDMILGL EVELHDAFIE QEPESLLEHM QHEVLALTHR GAIEPLPAQE LLTNGEEYPK IPLAEDDMTL QVHACHSAVR ELEVLHDQLL HLFADHPELH PGDVIVMMPD VASYAPIIDG VFGGTDKALH IPYAISDRNA QQESPLLNSF IQLMSLHQSR IGLSDVLALC EVPAVQRKFD ITPEEFDLLS VWLADAGVRW GWDGQDKTRW ALPNEPQNTW LFGLQRLLAG YAMGGESMFD DAHEPIAPYE HIEGQHVVAL GKFYLFSREL GNALAFCQSA ASLHAKIKGA LSLIEQLYLP DDDDQTYVLQ LRQSLEQMTV HEHQFSGEIV HDVFLAELEQ SLSSKGVGQR FLAGYVNFCT LMPMRSVPFK VVCLLGLNDG DYPRQVVPVG FDLMRIGKGR RGDRSRRLDD RYLFLEAILS ARKRLYLSFQ GFSAKDNSPR SPSILLSELL EYTQQTFCLA GDESLETKTC ADNLAKHIYH EHALQPFNPV YFATKRDAHE EEPLPSAMAS FQTPWLALAQ QLTDGSVHSD KEVDFCPAPL FSLPELAQVT EVELDELLIF FSNPAKAFFS QRWQTRLTRV YDVQSDDEPF ELDALSRYVL NERFVTTQQQ DWTTRLRAEG KLPTGNIADI SLQPIRKQSR ALIDALVALI GGPLDEVPPT RAEVNFELSY LLDISPVPAS ELNANTNSST QNSVSATSTQ RIQITGWVDN LYGGNLVLWR PGKVKGNNVL QLWLTWLALC ANGSVAKHQR AYYIGVEDKE PFSIGAVDKD EAKTQLAIFI RYWRLGQLQV LHFYPKTAYE WLSVGDEAKA LMKAKNAFYG SYFAKGEGEE PHIRRVCPDL NQHFCAFSEV SHALFDPLFD ALGEAS
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