| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1749 |
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| Symbol | |
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| ID | 4173678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2092742 |
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| End bp | 2093659 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054759 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_661324 |
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| Protein GI | 109898069 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTG TTTTTATAAG CCACCCGGGT TGCGGTTTGC ATGAGGCAGG CACAGATCAC
CCAGATAGCC CAGACCGATT ACATGCGATT AACGATCAGC TTATTGCGTC AAGGCTCGAT
TTTATTATTG ATAAACAACA GGCAATTCAG GCCACAAAAG AGCAGTTGTA CTTAGCACAC
GACAAAGCCT ATGTGGATCA TGTCTTCGCC AGTGCCCCCA AAGAAGGCGT TATAGAGTTA
GCACCCGACA CCCAATTAGG GCAGCACAGT TTACACGCGG CGTTATATGC AGCTGGGGCG
AATGTGATGG CCGTGGACTT AGTGATGCAA GACAAGGCCG AACAGGCGTT TTGCGCAGTG
CGCCCGCCGG GTCACCACGC CGAGCATGCC AAAGCCATGG GCTTCTGCTT TTTTAATAAT
ATTGCGGTAG CTGCGGCTTA CGCTATGGCG CAATATGGTT TAGAGCGTGT TGCCATTATT
GATTTTGACG TACACCACGG TAACGGTACT GAAGACATTT TTTTCAACGA TAAACGCGTG
CTGTTTTGCT CATCATTTGA GTCGCCTTTT TTCCCTTACA ACATGGGGCC AGGGAACGAG
CATATTTTAA ACCTGCCTTT GCCCGCGGGG ACTTATGGTG ATGAATTTAT GCAAGCCATT
AGCGAGCAGT GGTTGCCTAA AATAGATGCC TTTGCTCCGC AACTTATCTT AATCTCTGCC
GGTTTTGACA GCCACTATGA AGATGATATG GGGCACTTTA ATTTGGTCGA AACGGACTTT
TACTGGTTAA CCGCAGAGCT TAAAAAACTG GCCGTTAAGC ATTGCAATGC CAAGATGGTG
TCTACTTTGG AGGGGGGCTA TGTGTTGAAT GCTCTGGGGC GCAGCGTAGC GGCGCATATA
AAAGGGATGA TGGATTGA
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| Protein sequence | MSFVFISHPG CGLHEAGTDH PDSPDRLHAI NDQLIASRLD FIIDKQQAIQ ATKEQLYLAH
DKAYVDHVFA SAPKEGVIEL APDTQLGQHS LHAALYAAGA NVMAVDLVMQ DKAEQAFCAV
RPPGHHAEHA KAMGFCFFNN IAVAAAYAMA QYGLERVAII DFDVHHGNGT EDIFFNDKRV
LFCSSFESPF FPYNMGPGNE HILNLPLPAG TYGDEFMQAI SEQWLPKIDA FAPQLILISA
GFDSHYEDDM GHFNLVETDF YWLTAELKKL AVKHCNAKMV STLEGGYVLN ALGRSVAAHI
KGMMD
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