Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1725 |
Symbol | |
ID | 4171934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2062829 |
End bp | 2066311 |
Gene Length | 3483 bp |
Protein Length | 1160 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638054735 |
Product | transcription-repair coupling factor |
Protein accession | YP_661300 |
Protein GI | 109898045 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCAA GTATTTTTAA TCCGACTTTG GCCAAAGGCC AACGAGATGC AATTCACTGG GGCAATTTAC ACGGCAGTAG TTTGGCAATG TCTATTGCCA ACGCTGCGGG CAAGACCAAA GGCCCTATTT TGCTGGTAAC GGCAGATACC CCAAGCGCCA TGAAATTAGA AAAAGAACTC AGCTTTTTCT TACAAGGTAA AAATGTGCAA GTGCAGCTTT TTCCCGATTG GGAAACCCTG CCCTACGACA ACTTTTCCCC TCATCAAGAT ATCATTTCAC AGCGTTTAGA AACCTTATAC CGCCTCACTC AGGCCGAGAA CTGTGTCTTC ATTGTGCCGG TTAATACCTT GATGCTGCGC ATGGCACCAA CAGATTACCT CAGCAAGTAT TTGTTGTTTT TAAAGGTCAA TCAAACCTTA GACATAGACG CGTTCCGTTT AGGGTTAGAG CGCGCTGGCT ACCAACATGT CAATCAGGTG ATGGGCCACA GTGAGTTTTC GATTCGCGGT AGCATTATCG ATTTATTCCC CATGGGCAGT CAGCAGCCGT TTCGTATCGA CTTATTCGAT AATGACGTCG ACAGCATTCG TTATTTCGAC CCCGACAGCC AACGCTCAGG GGATAAAATT GACGAAATTA AGCTGCTACC GGCGCGTGAG TTTCCTACTG ATCAAGACGG CATCAAACTG TTTCGTCAGC AGTACTTAGA AAAATTCGAC GCCAATAATT CTAAAGAGTC TATCTATTAC CAAGTCGGTA AAGGCATGAT GCCTGGCGGC ATTGAATACT ACTTGCCGCT GTTTTTTGAG CAAAGCGCCA CCCTGTTTGA TTACCTTCAC CCAGACACCT TACTCATGAT GCACGGCGAT TTAGCCAAGG CCTGTGACTT CTTCTGGACT GATGTGAACG AGCGCTACGA GCAACTGCGT TATAACCTCA GTCGCCCGCT GATGGCCCCC GCAGATTTAT TTTTGCGCAA TGAAGAACTC TTCGGCGCGT TAAAGCAGTG GCCACGGATC ACCATTGAGC AAAATGCCAA GGAGCAAAAA GCCGGCGTCA CCAATTACGA CACCCGCACG ATTGGTGATA TCGCGATAAA ATCACAAAAC AAAGTGCCCT GGGCAACGCT TAAGCAGCGG GTTGCTGATT GGCAAAGAAG CGGCAGTAAA GTGCTGTTTA GCGCGGAATC TCAGGGACGC CGTGAAAGCC TGCTCGATTT ATTAGGTAAA GCGGGCATCA AACCCAAAGC GTTTGAACAC CTAGATGCAT TTCAAAAAAG CAAAGAGCTA GTAGGTATTA CCATTGGCTT GGCCGAACAC AGTTTCGTGC TCTTTGAAGA CAACAAAGAA CTGGCGTTTA TTACCGAAAC CGAATTGCTC GGCCATAAGA TAAGTCAGCG CCGTCTGCGT GATAAACGCC AAGCCACTGA CGAAAACGCC GTTATTCGCA ACTTGGCTGA ACTGGCCATT GGCCAGCCTG TGGTGCATTT AGATCACGGC GTGGGTCGCT ACCTCGGCTT ACAAACATTA GATGCTGGCG GGATCACCAC AGAATACCTC ACCATTGAAT ACGCCAAAGA AGCCAAGTTA TATGTGCCGG TATCCGCGCT GCATTTGATC AGCCGCTACA GTGGTGGTGA TTTAGAAAAA GCCCCTCTGC ACAATCTAGG CACCGAGACC TGGAGCAAAG CCAAGCAAAA AGCCGCCGAG CGCGTGCGAG ACGTGGCCGC ACAATTACTT GACGTATACG CTAGGCGCGC AGCTAAGCCC GGTTACTCTT ATAAAATAGC CTGGGACGAA TACCAAGCTT TCAGCGACAG TTTCCCCTTT GAAGAAACCT TAGATCAGCA ACAAGCCATC AACGCTGTTA TTCAAGATAT GGGTAGCAGC AACGCCATGG ACAGACTCGT GTGTGGTGAT GTGGGCTTTG GTAAAACCGA AGTCGCTATG CGCGCTGCCT TTATCGCAGC GAATCAAGGT AAACAAGTGG CCATCTTGGT CCCCACCACT TTGCTTGCCC AGCAACATTA TGAAAACTTC AAAGACAGAT TCGCTGATTG GCCGTTTAAG ATAGAAGTAA TGTCACGTTT TGGCAGTGCC AAAGACCAAA AAGGTGTCAT GGCCGGACTC GACGATGGCA AAGTGGATAT TGTAGTGGGC ACCCATAAAC TGCTGCAAAG TGATGTGAAA TTTGATGACT TGGGCTTAGT TATTATCGAT GAAGAGCACC GATTTGGCGT ACGCCAAAAA GAGAAATTTA AAGCCCTGCG CTCAGACGTA GACATTTTGA CTTTGACCGC CACGCCCATA CCGAGAACGC TTAACATGGC GCTTTCCGGC ATGCGCGACT TGTCAATTAT AGCGACGCCG CCAGCCAAAC GTTTGGCGAT CAAGACCTTT GTGAACCAAC GTAGCAAAGA GCTTATCCGC GAAGCCATCA TGCGGGAAAT TCTGCGCGGT GGTCAGGTGT ACTTTCTGCA CAACGAAGTA GATAGTATCG AGCGTACCGC TGACGAAATT GCCGAAATGG TGCCTGAAGC ACGTATTGCC ATAGGCCATG GCCAAATGCG CGAGCGGGAA CTTGAAAAGG TCATGGGGGA TTTCTACCAC CAGCGACACA ATGTGTTGGT GTGTACCACC ATCATTGAAA CCGGTATCGA TGTGCCATCA GCGAATACCA TTATCATGGA CAGAGCGGAT CATCTTGGCC TTGCTCAGTT ACACCAATTG CGTGGCCGTG TGGGTCGTTC TCATCACCAA GCTTACGCCT ATTTATTAAC GCCGCACCCT AAACGCATGA CCAAAGACGC CAAAAAACGT CTGGATGCCA TATCCTCACT GGAAGATTTA GGCGCAGGTT TTGCCCTTGC TACTCACGAT CTAGAAATAC GCGGTGCCGG TGAATTGCTC GGGGACGACC AAACCGGTCA AATCACCACG GTCGGCTTTA CTTTATATAT GGAAATGTTA GAGCAAGCGG TGGAAGCGTT AAAAGAAGGC AAAGAGCCAT CACTTGACAC CGCCCTTGCT AATCAAACGG AAATCGAATT GCGCTTACCT GCACTATTCC CAGAAGATTA CATCAGTGAT GTGAACACCC GTTTGTCTTT GTATAAAAAG CTCGCTAGCT GCAAAAACGA GAGACAAATC AATGAAGTGC AAATTGAATT GATCGACCGC TTTGGCTTAC TGCCTGATGC CGCTAAGAAT TTAGTGCAAA TCAGTCAAAT GAAATTAGTG GCCAAGAAAG TCGGTATTAA TAAGGTTGAA GCCAACAATG CAGGGGGTGC GATTGAGTTT TCAGATAAAA CCCAAATCGA CCCAAGCTTT ATCATTAAAC TGATACAATC ACAGCCGCGC ATTTATCGAC TTGAAGGCGC CAACAAATTG AAATTCAATG TACCAACACA ATCCGCCAGC GATAGGCTGC AACTTATCCT GGATATGTTA AATGAGTTTA GCCAGCAATT AAGAGCCGCT TAA
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Protein sequence | MTASIFNPTL AKGQRDAIHW GNLHGSSLAM SIANAAGKTK GPILLVTADT PSAMKLEKEL SFFLQGKNVQ VQLFPDWETL PYDNFSPHQD IISQRLETLY RLTQAENCVF IVPVNTLMLR MAPTDYLSKY LLFLKVNQTL DIDAFRLGLE RAGYQHVNQV MGHSEFSIRG SIIDLFPMGS QQPFRIDLFD NDVDSIRYFD PDSQRSGDKI DEIKLLPARE FPTDQDGIKL FRQQYLEKFD ANNSKESIYY QVGKGMMPGG IEYYLPLFFE QSATLFDYLH PDTLLMMHGD LAKACDFFWT DVNERYEQLR YNLSRPLMAP ADLFLRNEEL FGALKQWPRI TIEQNAKEQK AGVTNYDTRT IGDIAIKSQN KVPWATLKQR VADWQRSGSK VLFSAESQGR RESLLDLLGK AGIKPKAFEH LDAFQKSKEL VGITIGLAEH SFVLFEDNKE LAFITETELL GHKISQRRLR DKRQATDENA VIRNLAELAI GQPVVHLDHG VGRYLGLQTL DAGGITTEYL TIEYAKEAKL YVPVSALHLI SRYSGGDLEK APLHNLGTET WSKAKQKAAE RVRDVAAQLL DVYARRAAKP GYSYKIAWDE YQAFSDSFPF EETLDQQQAI NAVIQDMGSS NAMDRLVCGD VGFGKTEVAM RAAFIAANQG KQVAILVPTT LLAQQHYENF KDRFADWPFK IEVMSRFGSA KDQKGVMAGL DDGKVDIVVG THKLLQSDVK FDDLGLVIID EEHRFGVRQK EKFKALRSDV DILTLTATPI PRTLNMALSG MRDLSIIATP PAKRLAIKTF VNQRSKELIR EAIMREILRG GQVYFLHNEV DSIERTADEI AEMVPEARIA IGHGQMRERE LEKVMGDFYH QRHNVLVCTT IIETGIDVPS ANTIIMDRAD HLGLAQLHQL RGRVGRSHHQ AYAYLLTPHP KRMTKDAKKR LDAISSLEDL GAGFALATHD LEIRGAGELL GDDQTGQITT VGFTLYMEML EQAVEALKEG KEPSLDTALA NQTEIELRLP ALFPEDYISD VNTRLSLYKK LASCKNERQI NEVQIELIDR FGLLPDAAKN LVQISQMKLV AKKVGINKVE ANNAGGAIEF SDKTQIDPSF IIKLIQSQPR IYRLEGANKL KFNVPTQSAS DRLQLILDML NEFSQQLRAA
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