Gene Patl_1725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1725 
Symbol 
ID4171934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2062829 
End bp2066311 
Gene Length3483 bp 
Protein Length1160 aa 
Translation table11 
GC content48% 
IMG OID638054735 
Producttranscription-repair coupling factor 
Protein accessionYP_661300 
Protein GI109898045 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGCAA GTATTTTTAA TCCGACTTTG GCCAAAGGCC AACGAGATGC AATTCACTGG 
GGCAATTTAC ACGGCAGTAG TTTGGCAATG TCTATTGCCA ACGCTGCGGG CAAGACCAAA
GGCCCTATTT TGCTGGTAAC GGCAGATACC CCAAGCGCCA TGAAATTAGA AAAAGAACTC
AGCTTTTTCT TACAAGGTAA AAATGTGCAA GTGCAGCTTT TTCCCGATTG GGAAACCCTG
CCCTACGACA ACTTTTCCCC TCATCAAGAT ATCATTTCAC AGCGTTTAGA AACCTTATAC
CGCCTCACTC AGGCCGAGAA CTGTGTCTTC ATTGTGCCGG TTAATACCTT GATGCTGCGC
ATGGCACCAA CAGATTACCT CAGCAAGTAT TTGTTGTTTT TAAAGGTCAA TCAAACCTTA
GACATAGACG CGTTCCGTTT AGGGTTAGAG CGCGCTGGCT ACCAACATGT CAATCAGGTG
ATGGGCCACA GTGAGTTTTC GATTCGCGGT AGCATTATCG ATTTATTCCC CATGGGCAGT
CAGCAGCCGT TTCGTATCGA CTTATTCGAT AATGACGTCG ACAGCATTCG TTATTTCGAC
CCCGACAGCC AACGCTCAGG GGATAAAATT GACGAAATTA AGCTGCTACC GGCGCGTGAG
TTTCCTACTG ATCAAGACGG CATCAAACTG TTTCGTCAGC AGTACTTAGA AAAATTCGAC
GCCAATAATT CTAAAGAGTC TATCTATTAC CAAGTCGGTA AAGGCATGAT GCCTGGCGGC
ATTGAATACT ACTTGCCGCT GTTTTTTGAG CAAAGCGCCA CCCTGTTTGA TTACCTTCAC
CCAGACACCT TACTCATGAT GCACGGCGAT TTAGCCAAGG CCTGTGACTT CTTCTGGACT
GATGTGAACG AGCGCTACGA GCAACTGCGT TATAACCTCA GTCGCCCGCT GATGGCCCCC
GCAGATTTAT TTTTGCGCAA TGAAGAACTC TTCGGCGCGT TAAAGCAGTG GCCACGGATC
ACCATTGAGC AAAATGCCAA GGAGCAAAAA GCCGGCGTCA CCAATTACGA CACCCGCACG
ATTGGTGATA TCGCGATAAA ATCACAAAAC AAAGTGCCCT GGGCAACGCT TAAGCAGCGG
GTTGCTGATT GGCAAAGAAG CGGCAGTAAA GTGCTGTTTA GCGCGGAATC TCAGGGACGC
CGTGAAAGCC TGCTCGATTT ATTAGGTAAA GCGGGCATCA AACCCAAAGC GTTTGAACAC
CTAGATGCAT TTCAAAAAAG CAAAGAGCTA GTAGGTATTA CCATTGGCTT GGCCGAACAC
AGTTTCGTGC TCTTTGAAGA CAACAAAGAA CTGGCGTTTA TTACCGAAAC CGAATTGCTC
GGCCATAAGA TAAGTCAGCG CCGTCTGCGT GATAAACGCC AAGCCACTGA CGAAAACGCC
GTTATTCGCA ACTTGGCTGA ACTGGCCATT GGCCAGCCTG TGGTGCATTT AGATCACGGC
GTGGGTCGCT ACCTCGGCTT ACAAACATTA GATGCTGGCG GGATCACCAC AGAATACCTC
ACCATTGAAT ACGCCAAAGA AGCCAAGTTA TATGTGCCGG TATCCGCGCT GCATTTGATC
AGCCGCTACA GTGGTGGTGA TTTAGAAAAA GCCCCTCTGC ACAATCTAGG CACCGAGACC
TGGAGCAAAG CCAAGCAAAA AGCCGCCGAG CGCGTGCGAG ACGTGGCCGC ACAATTACTT
GACGTATACG CTAGGCGCGC AGCTAAGCCC GGTTACTCTT ATAAAATAGC CTGGGACGAA
TACCAAGCTT TCAGCGACAG TTTCCCCTTT GAAGAAACCT TAGATCAGCA ACAAGCCATC
AACGCTGTTA TTCAAGATAT GGGTAGCAGC AACGCCATGG ACAGACTCGT GTGTGGTGAT
GTGGGCTTTG GTAAAACCGA AGTCGCTATG CGCGCTGCCT TTATCGCAGC GAATCAAGGT
AAACAAGTGG CCATCTTGGT CCCCACCACT TTGCTTGCCC AGCAACATTA TGAAAACTTC
AAAGACAGAT TCGCTGATTG GCCGTTTAAG ATAGAAGTAA TGTCACGTTT TGGCAGTGCC
AAAGACCAAA AAGGTGTCAT GGCCGGACTC GACGATGGCA AAGTGGATAT TGTAGTGGGC
ACCCATAAAC TGCTGCAAAG TGATGTGAAA TTTGATGACT TGGGCTTAGT TATTATCGAT
GAAGAGCACC GATTTGGCGT ACGCCAAAAA GAGAAATTTA AAGCCCTGCG CTCAGACGTA
GACATTTTGA CTTTGACCGC CACGCCCATA CCGAGAACGC TTAACATGGC GCTTTCCGGC
ATGCGCGACT TGTCAATTAT AGCGACGCCG CCAGCCAAAC GTTTGGCGAT CAAGACCTTT
GTGAACCAAC GTAGCAAAGA GCTTATCCGC GAAGCCATCA TGCGGGAAAT TCTGCGCGGT
GGTCAGGTGT ACTTTCTGCA CAACGAAGTA GATAGTATCG AGCGTACCGC TGACGAAATT
GCCGAAATGG TGCCTGAAGC ACGTATTGCC ATAGGCCATG GCCAAATGCG CGAGCGGGAA
CTTGAAAAGG TCATGGGGGA TTTCTACCAC CAGCGACACA ATGTGTTGGT GTGTACCACC
ATCATTGAAA CCGGTATCGA TGTGCCATCA GCGAATACCA TTATCATGGA CAGAGCGGAT
CATCTTGGCC TTGCTCAGTT ACACCAATTG CGTGGCCGTG TGGGTCGTTC TCATCACCAA
GCTTACGCCT ATTTATTAAC GCCGCACCCT AAACGCATGA CCAAAGACGC CAAAAAACGT
CTGGATGCCA TATCCTCACT GGAAGATTTA GGCGCAGGTT TTGCCCTTGC TACTCACGAT
CTAGAAATAC GCGGTGCCGG TGAATTGCTC GGGGACGACC AAACCGGTCA AATCACCACG
GTCGGCTTTA CTTTATATAT GGAAATGTTA GAGCAAGCGG TGGAAGCGTT AAAAGAAGGC
AAAGAGCCAT CACTTGACAC CGCCCTTGCT AATCAAACGG AAATCGAATT GCGCTTACCT
GCACTATTCC CAGAAGATTA CATCAGTGAT GTGAACACCC GTTTGTCTTT GTATAAAAAG
CTCGCTAGCT GCAAAAACGA GAGACAAATC AATGAAGTGC AAATTGAATT GATCGACCGC
TTTGGCTTAC TGCCTGATGC CGCTAAGAAT TTAGTGCAAA TCAGTCAAAT GAAATTAGTG
GCCAAGAAAG TCGGTATTAA TAAGGTTGAA GCCAACAATG CAGGGGGTGC GATTGAGTTT
TCAGATAAAA CCCAAATCGA CCCAAGCTTT ATCATTAAAC TGATACAATC ACAGCCGCGC
ATTTATCGAC TTGAAGGCGC CAACAAATTG AAATTCAATG TACCAACACA ATCCGCCAGC
GATAGGCTGC AACTTATCCT GGATATGTTA AATGAGTTTA GCCAGCAATT AAGAGCCGCT
TAA
 
Protein sequence
MTASIFNPTL AKGQRDAIHW GNLHGSSLAM SIANAAGKTK GPILLVTADT PSAMKLEKEL 
SFFLQGKNVQ VQLFPDWETL PYDNFSPHQD IISQRLETLY RLTQAENCVF IVPVNTLMLR
MAPTDYLSKY LLFLKVNQTL DIDAFRLGLE RAGYQHVNQV MGHSEFSIRG SIIDLFPMGS
QQPFRIDLFD NDVDSIRYFD PDSQRSGDKI DEIKLLPARE FPTDQDGIKL FRQQYLEKFD
ANNSKESIYY QVGKGMMPGG IEYYLPLFFE QSATLFDYLH PDTLLMMHGD LAKACDFFWT
DVNERYEQLR YNLSRPLMAP ADLFLRNEEL FGALKQWPRI TIEQNAKEQK AGVTNYDTRT
IGDIAIKSQN KVPWATLKQR VADWQRSGSK VLFSAESQGR RESLLDLLGK AGIKPKAFEH
LDAFQKSKEL VGITIGLAEH SFVLFEDNKE LAFITETELL GHKISQRRLR DKRQATDENA
VIRNLAELAI GQPVVHLDHG VGRYLGLQTL DAGGITTEYL TIEYAKEAKL YVPVSALHLI
SRYSGGDLEK APLHNLGTET WSKAKQKAAE RVRDVAAQLL DVYARRAAKP GYSYKIAWDE
YQAFSDSFPF EETLDQQQAI NAVIQDMGSS NAMDRLVCGD VGFGKTEVAM RAAFIAANQG
KQVAILVPTT LLAQQHYENF KDRFADWPFK IEVMSRFGSA KDQKGVMAGL DDGKVDIVVG
THKLLQSDVK FDDLGLVIID EEHRFGVRQK EKFKALRSDV DILTLTATPI PRTLNMALSG
MRDLSIIATP PAKRLAIKTF VNQRSKELIR EAIMREILRG GQVYFLHNEV DSIERTADEI
AEMVPEARIA IGHGQMRERE LEKVMGDFYH QRHNVLVCTT IIETGIDVPS ANTIIMDRAD
HLGLAQLHQL RGRVGRSHHQ AYAYLLTPHP KRMTKDAKKR LDAISSLEDL GAGFALATHD
LEIRGAGELL GDDQTGQITT VGFTLYMEML EQAVEALKEG KEPSLDTALA NQTEIELRLP
ALFPEDYISD VNTRLSLYKK LASCKNERQI NEVQIELIDR FGLLPDAAKN LVQISQMKLV
AKKVGINKVE ANNAGGAIEF SDKTQIDPSF IIKLIQSQPR IYRLEGANKL KFNVPTQSAS
DRLQLILDML NEFSQQLRAA