| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1723 |
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| Symbol | |
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| ID | 4171932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2058701 |
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| End bp | 2061307 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054733 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661298 |
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| Protein GI | 109898043 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00128023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAAGC AAAATAAACT TAGCAAAGCA ATAAAAACCG GGTTGATGAC CTGTGCAATC
AGTTCTGTGG CAGTATCATC AGCAATGGCA CAAGAAACAC AGACGCCAGA TGAAGCGGCT
GCTGCGTATG AGAAAGTGGT AATTACCGGC TCTCGCGGCG CTCCTCGCTC GCTAGCGGAT
TCGCCTGTAC CAGTTGATGT ACTCAGTGAA GACGATTTAG CCGCAGTGCC TTTTTCGGAT
ACCAATGACA TATTAAAAAC GTTGGTGCCG TCATATTCAT TGCAGCGCCA GCCCATATCG
GACGGTGCAT CTTTTATTCG TCCTGCCACC TTACGCGGTA TGCCAACGGA TAAAACCTTA
GTCTTGGTAA ACTCTAAACG TCGCCATCGC TCTGCACTTG TGCAAATCGG TGGTTCTGGT
ACGCAAGGGC CTGATATTGC GACCATTCCG TCTTCTGCCC TTAAAGGTGT TGAAGTATTG
CGCGATGGTG CTGCAGCACA ATATGGTTCT GATGCTATCG CAGGGGTTAT CAACTTCGTT
TTAAAAGATA ACGATGAGGG TGGCTCTTTC TCAGTTGATG CTGGTCAATA TTACGAAGGT
GATGGCGAAC AAGTCACACT AACGGGTAAC ATTGGTTTCG CATTAGGCGA CAACGGCTTT
TTGAGTTTAT CTGCTGAATA CGCAGATTCA GACTCAACCA ATCGCGGTGA GCAATATTGT
GAAGATTGGT GGTGTGGTGA TGCAAGCGAT CCACGGGGCG CAGCAAACCC TTATTTAAGC
GACCCTGATT TTGTTGCCGG TATGGAAAAT GCCAACTTAG GCGGCGAAGA CGTGGTACAG
CCTTGGGGAC AACCCAATAC CTCCGCAACG CGTATTTTCT TTAACAGTGG TTACGAATTT
AACGACGACA TGAAGTTCTA CGCTTTTGGT AACTACTCTG AAAGTGAAGG GGACGCTTCC
TTCTACTATC GCTACCCAGG TAACGGCACC ATAGAAGATT TGCGCCAAGA AGATGGTTCT
ATTTATAGCC CATTAGAGAA ATTCCCAGGT GGTTTTACGC CACGCTTCTT TGGTGATATT
ACTGATTTCT CATTGGTTAC AGGCCTAGAA GGCGAGTTTG CTAATGGCAT GACGTACGAT
TTCAGCGGTC GTTATGGCTC AAATGAAATT GAATATACCT TGAAAAACAC CATTAACCCT
TCCATGGGAG CTGATTCGCC TACCTCGTTC CATCCAGGCG ATCTGATTAA CGAAGAGTTG
CAATTCTCTG CAGATTTCAC CAAGTACTTT GACTTTGGTT TGTACTCAGA CGTGTTGTTT
GCCTTTGGTG CCACTTACAT GGAAGAAACC TACGAGCTTA AAGGCGGTGA CGAAGCATCT
TACTCTGCAG GCGCTTACGC TACATCTGAT CCATGGGGAT TCTGTGACGA TGCAGGCGGC
ACGACTGCTG CTGGCTTAGC GGTTATCACA GGTGGCTCAA CCCTTGATTG TTCAAATGCT
GATGATCCTG TTTACACCGC AGTTGGTGTT GGCTCTAATG GTTTCCCAGG GTATTCACCT
GAGTACTCTG GTGAATATGA GCGTGATATG CACGGTATCT ACGGGGATGT GAGCAGTGAC
GTAACTGAAG CGTTATTTTT GCAAGCTGCT ATGCGTTACG AAGATTACTC GGATTTCGGT
TCTGAACTCG TCGGTAAGGT CGCGTTTAAG TACACCTTGA GTGACGAATT TAACATGCGT
GGCTCAGTGG GTACGGGCTT TAGGGCGCCA ACACCTGGTC AACAAGGTAC TACTAACGTT
TCCACCCGTT TACCTGACGG GCTGCCGGTA GCCACAGGTT TATTCCCTGC ATTAAGTGCA
GTGGGTCAAG CTTTGGGTGC TGAAGCGCTA AAACCTGAGA AATCATTGAA CTACAGCCTT
GGTGTAACCG GCAATATTGA TGACTTGAAC GTGACATTAG ATTTCTATCG CATTGAGCTT
GAAGATCGCT TCTATGCGGT ATCGACCTTG GATGTATCCA CGGATGAAAC TGATGCAGAT
GCCTATGCTA ACTTCTTGAA GCTAGAAGCA GCGGGTGTCG CTGGTGCAAA CACTATTGGT
GGTGTTAACT ACTTCCAAAA TGCGTTTGAT ACTGTGACCA ACGGTATGGA TTTTGTTGTG
ACCTACACCA TGGGTGATAC TGTACTAACT ACATCTGTTA ACTACAATAA AACCGAAATT
GATTCAGATG CATCAGCTTA CTTGAATGCT GAAGATCAAT TCGATTTAGA GAATGCTATA
CCTGAATGGC GCGGTGTTGC TTCAGCGAAA CACAGCTTTG AAGACTTAAC ACTATTGGTA
CGCGCTAACG TATATGGCTC TTATGAAAAC GCGATAAGCT CTGATGCGAC AACGCGCCAA
GAATACGACC CAACCGTATT CTTCGATTTA GAAGCCAGCT ACCAAATCAG TGAAAATGTC
AGTATTGCAG CGGGTGCACG TAACATCTTT GACGAATACC CAGACAAAGA TGACGGCGAC
GACTGTTGTG GTGCGGTGTA CTGGTCAAGC AACATCGTTG ATTGGCAGGG TGGTTACTAC
TACATGCGTT TGAATACTGT TTTCTAG
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| Protein sequence | MLKQNKLSKA IKTGLMTCAI SSVAVSSAMA QETQTPDEAA AAYEKVVITG SRGAPRSLAD
SPVPVDVLSE DDLAAVPFSD TNDILKTLVP SYSLQRQPIS DGASFIRPAT LRGMPTDKTL
VLVNSKRRHR SALVQIGGSG TQGPDIATIP SSALKGVEVL RDGAAAQYGS DAIAGVINFV
LKDNDEGGSF SVDAGQYYEG DGEQVTLTGN IGFALGDNGF LSLSAEYADS DSTNRGEQYC
EDWWCGDASD PRGAANPYLS DPDFVAGMEN ANLGGEDVVQ PWGQPNTSAT RIFFNSGYEF
NDDMKFYAFG NYSESEGDAS FYYRYPGNGT IEDLRQEDGS IYSPLEKFPG GFTPRFFGDI
TDFSLVTGLE GEFANGMTYD FSGRYGSNEI EYTLKNTINP SMGADSPTSF HPGDLINEEL
QFSADFTKYF DFGLYSDVLF AFGATYMEET YELKGGDEAS YSAGAYATSD PWGFCDDAGG
TTAAGLAVIT GGSTLDCSNA DDPVYTAVGV GSNGFPGYSP EYSGEYERDM HGIYGDVSSD
VTEALFLQAA MRYEDYSDFG SELVGKVAFK YTLSDEFNMR GSVGTGFRAP TPGQQGTTNV
STRLPDGLPV ATGLFPALSA VGQALGAEAL KPEKSLNYSL GVTGNIDDLN VTLDFYRIEL
EDRFYAVSTL DVSTDETDAD AYANFLKLEA AGVAGANTIG GVNYFQNAFD TVTNGMDFVV
TYTMGDTVLT TSVNYNKTEI DSDASAYLNA EDQFDLENAI PEWRGVASAK HSFEDLTLLV
RANVYGSYEN AISSDATTRQ EYDPTVFFDL EASYQISENV SIAAGARNIF DEYPDKDDGD
DCCGAVYWSS NIVDWQGGYY YMRLNTVF
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