| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1719 |
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| Symbol | |
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| ID | 4171928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2054459 |
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| End bp | 2055457 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054729 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_661294 |
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| Protein GI | 109898039 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACAA AACAATTAGA GTACTTTTTG GCCACTGTAG AGCAAGGTAG TATATCGGGC
GCCTCAAAAG TGCTTGATGT CGCACAGCCT GCCATTAGTT TGCAGCTGGC GAATTTAGAA
CATGAATTAA AAATAAAACT CTTTGAGCGA AATTTTCGTG GTGTGTCACT CACTCATGCA
GGCTCTCAAT TTGAAGAGCA CGCTCGGCTC ATTTTAAACC AAATCAATAC CGCAAAATTA
GACTTGATTG GGCAGCAAAC CCAGTGCAAA GGCAAGGTGA TCGTTGGCCT TAGTCAATCA
TTGTGTAATG TGCTGTCGGT GCAGTTACAG ACAGAGCTAG AGCACCGCTT TCCTAATGTA
GAGTTAGCCT TTAGAGTTGG GCCCTCGTAC ATGGTCGAAA GTTGGTTCGC CGAACAGCAG
ATTGATATTG CTCTGTGTTA CAACTCAGAT TTAGGTAAAC ATGCCGCTAG TTCATTGCCT
CTTATTAACG AGAATTTGTA TTTGTATATT TCACCACGGC CTAAAAACCC CAGCTACAGT
GAACTTTCAT TGTTTGGCTC AATCCCTTTT GAGTCGTTAC AAGATTACGA ACTATTTATG
CCAGACAGAC GGGACGCCCT ACCTAAATTG CTTGAGGAGC AAGCCCGAAA AAACAATATT
CAATTAAAGA CACGTAACGC CTTTGGACAA TTGATGACCA CTTTGCATTA TGTTTCTCAG
GGGTTTGGTT TAGCCATTTA CCCTTCATCA GCGACGTGCC ACTTAGAAGC GAGTCATCAA
ATTCGAGCCA TTAATATCAC GGAGCCAGAG CTAAAACGTG AGGTTTATTT GCGCTTAGCC
GAGCATCAGC ACAAAAACCC CGCCGTTGCT GCCGTGTTTG AGCTTATTCG TGAAACAGCC
GCAAACTTGC ATGCTGATAA TAGCTGGCGA GGCGAGTTAC TTGACAATAA ATACCAGCAA
CCTTCGGTCA TTAGCATCGA GTCAGCTGTG GCTGGTTAA
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| Protein sequence | MNTKQLEYFL ATVEQGSISG ASKVLDVAQP AISLQLANLE HELKIKLFER NFRGVSLTHA
GSQFEEHARL ILNQINTAKL DLIGQQTQCK GKVIVGLSQS LCNVLSVQLQ TELEHRFPNV
ELAFRVGPSY MVESWFAEQQ IDIALCYNSD LGKHAASSLP LINENLYLYI SPRPKNPSYS
ELSLFGSIPF ESLQDYELFM PDRRDALPKL LEEQARKNNI QLKTRNAFGQ LMTTLHYVSQ
GFGLAIYPSS ATCHLEASHQ IRAINITEPE LKREVYLRLA EHQHKNPAVA AVFELIRETA
ANLHADNSWR GELLDNKYQQ PSVISIESAV AG
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