Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1712 |
Symbol | |
ID | 4171921 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2045922 |
End bp | 2047484 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638054722 |
Product | ABC transporter related |
Protein accession | YP_661287 |
Protein GI | 109898032 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATTTG GCGAAAAGCC ATTATTTGAA AATGTATCAG TTAAATTTGG TAACGGAAAT CGTTACGGCT TAATCGGCGC AAATGGCTGT GGTAAATCAA CCTTTATGAA GATACTTGGG GGAGACTTAG AGCAATCTGC CGGGAACGTT TCAACCGACC CAGGTGAGCG TATCGGTAAA TTGAAGCAAG ACCAGTTCGC ATACGAAGAG TACAGTGTTA TTGATACTGT AGTGATGGGA CACAATGAAC TGTGGAAAGT CAAAGCAGAG CGTGATGCTA TTTATGCTAA CCCTGAAATG ACGGAAGAAG ACGGTATTCG CGTTGCCGAT TTAGAATCAG AGTTCGCTGA AATGGATGGC TACACCGCAG AAGCACGTGC CGGCGAGTTA TTAATTGGTG TGGGTATTCC GGTAGAGCAA CACTATGGCC CAATGAGTGA GATAGCACCA GGTTGGAAAC TTCGCGTACT GCTTGCTCAA GTAATCTTTT CAGATCCAGA TATCATGCTA CTTGATGAGC CTACCAACAA CTTGGACATT AACACCATTC GTTGGCTAGA AGGCGTGCTA AACGAGCGTA ATTGCTCCAT GATCATCATC TCGCACGATC GCCATTTTTT AAACAGTGTG TGCACCCATA TGGCCGATTT GGATTATGGC GAAATTCGCT TATTCCCTGG TAACTATGAT GAGTATATGA CCGCCTCTAC TCAAGCCAGA GAACGCTTAG TATCAGATAA CGCTAAGAAA AAAGCGCAGA TCGCTGAACT GCGTACCTTT GTTAGCCGCT TCTCGGCGAA TGCATCTAAG TCTAAGCAAG CTACGTCTCG CGCTAAGCAG ATAGACAAGA TCAAACTGGA TGACATTAAA CCTTCAAGTC GTCAGACCCC TTTCATTCGC TTCGAGCAAA CGAAAAAGTT ACACCGTAAC GCATTAGAGT TAACGGGATT GAAGAAATCC TATGAAAAGG AGTTGTTCAA CGGTTTAGAC TTGATGGTTG AAGTTGGCGA ACGTATCGCA GTTATCGGCG AAAATGGTTT GGGTAAAACC ACCCTGTTGA AGTGTTTAGT CGGAGATACT GATTTAACAG CAGGCGAAGT CAAATGGTCC GAGAACTCGA ATATCGGTTA TTACGCCCAA GATCATGCTC ATGAGTTCGA AAAAGAAATG ACGCTCATGG AATGGATGTA TCAGTGGGCT CAAGAGGGTG ATGACGAGCA AGTCATGCGC GGTACATTAG GCCGCTTGCT TTTCTCTCAA AATGAGATCA CCAAATCGGT GAAAGTCATA TCCGGCGGTG AACAAGGCCG TATGATGTTT GGCAAATTGA TGCTTCAGCG CCCTAATATT TTGGTGATGG ATGAGCCGAC CAACCACATG GACATGGAAT CGATTGAATC ATTAAACTTA GCGTTAGAAA ACTACGCGGG CACGCTGATA TTCGTCAGTC ATGACCGAGA GTTTGTATCT TCAGTTGCTA CCCGCATCAT TGAAATAACA CCAAATGGAA TTGTTGATTT CCGTGGTAAC TATGAAAGTT ATTTAGAAAG CTTAGGTGCT TAA
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Protein sequence | MQFGEKPLFE NVSVKFGNGN RYGLIGANGC GKSTFMKILG GDLEQSAGNV STDPGERIGK LKQDQFAYEE YSVIDTVVMG HNELWKVKAE RDAIYANPEM TEEDGIRVAD LESEFAEMDG YTAEARAGEL LIGVGIPVEQ HYGPMSEIAP GWKLRVLLAQ VIFSDPDIML LDEPTNNLDI NTIRWLEGVL NERNCSMIII SHDRHFLNSV CTHMADLDYG EIRLFPGNYD EYMTASTQAR ERLVSDNAKK KAQIAELRTF VSRFSANASK SKQATSRAKQ IDKIKLDDIK PSSRQTPFIR FEQTKKLHRN ALELTGLKKS YEKELFNGLD LMVEVGERIA VIGENGLGKT TLLKCLVGDT DLTAGEVKWS ENSNIGYYAQ DHAHEFEKEM TLMEWMYQWA QEGDDEQVMR GTLGRLLFSQ NEITKSVKVI SGGEQGRMMF GKLMLQRPNI LVMDEPTNHM DMESIESLNL ALENYAGTLI FVSHDREFVS SVATRIIEIT PNGIVDFRGN YESYLESLGA
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