| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1682 |
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| Symbol | |
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| ID | 4172273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2011704 |
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| End bp | 2013386 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638054691 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_661257 |
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| Protein GI | 109898002 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTATT TTAATGCGGT GCACGTGTCT GTAATCATGA CGCTAAATCT TTGGGGTAGC
CGTATCCTTA AACCTATTTT CAGCTGTGTA CTAGTAAATG GCAGAAGTAA AGGACAGTTT
GCTACTGGTT CTTTCTGTTA TTTATCTGCG GCGCTATTGA TATGCAGTAT ATTCAGTCAT
CGTCTTTATG CACAAGAACA GGACACCTGC TTTGTATTCC ATGAACAGCA GAATGATACA
CCCCTTTCCC TTACGCTAAA TCAAATCAAA AGAGTGCCTG TTAAACAATT TACTAACCAC
CTATCAGTAG CGTGTCACGT CAAAGAACAG AGTGTATTAA TTATCAACAA CAATGCTATA
CGCAAAGCAA GTTTGCATAT TGAGCATGAA GAGCAGCAGA AAATTGCCGC TAATAAACTG
GTTTTTGTTT TACCCCAGGG GCAGTACAAC GCAAGTTTAG TACTAGACGC CGAGCGGGAC
TTTAGCCTAA CACTCGTTCG CAAAACCTGG CCAGATTACG CATTAGCGGG GCAACAACAT
AACTTGTTAT TGGGCCTGTT TTATGGGCTG TGCATTACAC TGGTTTTTTA TTTGTATGTG
ATGGGGAGAA GCCTTAAAGA TAAGCGCTTC CACTTTTATT GTTACTACGT TCTCTGTGCG
GGCATTTTTT TCTTGTTACA GGAAGGGAAC ATAAACCTAT TCTTTGATGC AAACCTAACC
AACAACATAA GGTTAAACCT TTTATTCGCT GGCTTAACGG TATTTACCGG CACGATTTTC
GTTGTAACCT TATTGGGCTT ACAGCGACGT TGGTCGCGAT TCACTCGCTA TGTCGTGATG
TATCCTGCTG TTTTCGTGTT GGGTGTCTCA ATTGTGCTGT GTTTTTTACC TAGAGGGGAA
TGGTTTACAT TACTTGCCAT CATTATGGCA AGAACCACCA TGGCCGTATT GATGTGTACG
TTTGGATTAA TTGCATATGC CTCCTACGTT CGAGTACACA CCGCTCGCCT TGTACTGCTC
GCTTCATTGA CTGTGTGTTG TGCGATGGTT TTCCGGATAT TTTTGGGTGA TCAAAGTCCG
TTTTTACAGC GTTATGGCCT GTTGTTTTCA TTTGCCATTG AGAGTTTTCT TCTTGCTATC
GCTACCTCAG AACGAATAAA GCGCATCAAC CAAGAGAAGA TTTTGGCTCA AGCCCAAGCC
ATGACGGATC CGCTATGTGA AATTTTTAAT CGAAGAGGCT GGGAAGAAGC CGCAGAAAAA
ATCGTAAAAA ACCACAACAC GCAGCAGGGA ATATTATGTT TGTTGTACAT CGATTTAGAT
TACTTCAAAG AGATTAATGA CAATTTTGGT CATAAAGCAG GAGACCAAGT ACTGCGAATT
ATGGCTAAAA TCATTCGTAA ACAAATGCGA GATCAAGATG CAGTTGGCCG TCTAGGCGGT
GATGAATTTG TCGCTCTTGC TCAATTTGAG GATGAACGTC AATCAGAAAT ATTAAGAGAA
CGTGTTACGA AACGCTTAAA GAATATTAAT ATCAGTACCG ACAGCGCGCA GATCCGAGTC
ACCGCCAGTG TGGGGTGTGT GGTGTTCAGT GATAACGAAA TAAGCGTTAG TGAAATGCTG
CAAAAAGCAG ATCAAGCGAT GTATATGAGC AAAAGGGAGA ATCAAGACAA GACCTGCTCT
TGA
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| Protein sequence | MTYFNAVHVS VIMTLNLWGS RILKPIFSCV LVNGRSKGQF ATGSFCYLSA ALLICSIFSH
RLYAQEQDTC FVFHEQQNDT PLSLTLNQIK RVPVKQFTNH LSVACHVKEQ SVLIINNNAI
RKASLHIEHE EQQKIAANKL VFVLPQGQYN ASLVLDAERD FSLTLVRKTW PDYALAGQQH
NLLLGLFYGL CITLVFYLYV MGRSLKDKRF HFYCYYVLCA GIFFLLQEGN INLFFDANLT
NNIRLNLLFA GLTVFTGTIF VVTLLGLQRR WSRFTRYVVM YPAVFVLGVS IVLCFLPRGE
WFTLLAIIMA RTTMAVLMCT FGLIAYASYV RVHTARLVLL ASLTVCCAMV FRIFLGDQSP
FLQRYGLLFS FAIESFLLAI ATSERIKRIN QEKILAQAQA MTDPLCEIFN RRGWEEAAEK
IVKNHNTQQG ILCLLYIDLD YFKEINDNFG HKAGDQVLRI MAKIIRKQMR DQDAVGRLGG
DEFVALAQFE DERQSEILRE RVTKRLKNIN ISTDSAQIRV TASVGCVVFS DNEISVSEML
QKADQAMYMS KRENQDKTCS
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