| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1680 |
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| Symbol | |
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| ID | 4172271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2006155 |
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| End bp | 2010729 |
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| Gene Length | 4575 bp |
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| Protein Length | 1524 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054689 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_661255 |
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| Protein GI | 109898000 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.482461 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGGTA AATATTGTTG TTTGATGGGA TGGTTGTGGA TATTGCTTTA TTCTTTGAAG
GCGCTGGCGG TCCCAGATGT TTCACATGCA ATATTAAAGT CCCCAGTTTT CTCTCAATTA
ACGACTGAAA ATGGCTTGAG TCAAGACACG ATCAACGTGA TGCACACAGA TGATCAAGGT
TTCTTGTGGC TAGGCACAGA CACAGGATTG AACCGTTACG ATGGTTATCA AGTCGACGTC
GTCGAACCGA GTAACGTCGC CCTAGGCGCA AAAACGATAA ATGACCTGAT GCAAGATAGA
CAAGGCAATT TATGGGTCGC GACATTTAGC GCGGGTATTT TCAAGATCAA CTTATCAAGC
GGCGAAGCAA GGTTAATCGA CAAGCGAAAA TCCCAAGTCA TAGCTGATTG GCAACAGAGT
TTTAATGCCA TCGCTGAAGA TAACGGCGGC GCAGTTTGGC TCGCATCAGA TGAGGAAATT
CTGCGATACG AGCCGCACAC AAATACTCTA AAAAGCATTT TTTCTATGGC CACGAATAAG
ATAGAAAAAG GCTATTATAT CCGCACCTTG GTTTGGCATA ACGATTTATT ATTTTTTGGC
ACCAATGAGC GCTTGTTCGT ATATTCCCCT CAGCTTAAGG AAAGCTTCGA TTTAGGCTTT
TTATTTGCAG AATTTAGCAA TGAAGGGCAA AAAGATGTCA AGTCTCTTTT CGTAGATAAA
AGTCGTGATA CATTGATGAT AGGGACGGTA AAGGGGTTAT ACAGTGTCTC TTTAGCGCAG
ATATCTGATT ATGTTACCCA GGATATTGCA CCTGACCCAC TCGCTACATT AATTGCAAGT
CGCAACATTT GGCGTATTCG CACCTCGAAT GATTCACTTT TTTACCTACC GACGGATCAG
GGGGTTTTCA CTTATGACGC CCAATCCGGA CAAGCCCAGC ATTTACTTTT ACCCACAGAC
AGTAGGTTAT TACTGTCACA AGACGTTGTT TACGATATTG CATTCGATGA CAGTAGCAAT
TTATGGCTAG GCACCCGCTC AGATGGGGTT TTGCATTGGG TTAGTACTTC GCAATCCTTT
CAAAATTTAC TCAATCTCAA CGGTGGGCGA TTTGCTAAAA CGTTGAGCGA TAATAATATA
TGGGCCTTAA TGCAAGTCGA CCCTAGCGGG TACTGGATAG GGACCGACAA TGGGCTAAAC
TACTATGATT TTGAAACGGC AACTGTTGAG ACCTTTTTAG TTTCATCTAA TGAGCTAGCA
CAGTATTCAG AATCAAGTAT TCATCAGATT TTACCAGCCG AGCCTGGGTA CTTATGGTTG
CTTACAGGAG AGGGGGTACG CCGTTTTCAT ATTCAATCAA GAAAGCTCGA AACGATACAG
GTCAAAAAAA CAGCCGATGA GCGCATTCTC AACGAATATA TTCAAAGCGC TATCGCAACG
AAAGACGGCG ATTTATTTTT AGTATATGAA CAAGGTGTTT ACTACTACAA TCTGCAAACA
AAGGACATCA ATGCACTCAA AGAGCTTAAT GCACTTGCTA CCACAAAGTT ACTGCGAGGC
ATTATGCCTC CGCTTCCAGG CGCTCCTAAT AGTCTTCTAT TGAGTACCTT AGGTGGCATG
TTTCAGTGGG ACATCAACCT AAAGCAATTA ACGCCTGTTC ATCAACTGGA CAAGCAATTA
AGTGCTAACT TATGGCCAGA TAGCTGGGTT CTGGATAAGC AAAATATTTT GTGGGTTAGC
TACCCAGGCT ATGGCTTAGT CGGGCTTGAT GGTGTCACCT TTGAACAAAG GTATTTCTTT
AATAAAGAGA ATCTACTGCC GTCGAATAAT ATTTATAGCT TGCAATCAGA TGGTGAAAAC
GCCATCTGGA TAAGCTCTCA CAACGGGTTA CTTAAATTCG ATCCCAAATT CATGACACTG
CAACGCTACG GCCACGCTCA CGGTTTAGCC AATGAAGAAT TCAATCAGGG AGCCAATATA
AAACTTGTTA ATGGCAAACT GGTATTCGGT TCGCCCAAAG GCCTAGTGAT GTTTACTCCT
GGGACATTGC CAAACAGCCA GAAAACGTCG CAAAAGCCCA AAATTACCGG CATAAAAGTT
TCAGCCTCGC CTTACTCATC GAAACTTATA GATTTAGCAG ATAGTGAAGT ACACATGGCT
TACGATGATG TGGGGTTGCG AATTAGATTC TCAACGTTGG AATTTGCTAA CTTACATAGC
ACACGGTATC AATATCGGCT TAGTGGGACA CAAGACATAA CCTATCCAAG TACACCCGAT
CCTCAGGTGT ATTTTCCCAA ACTTGAACCG GGATCATATG TTTTCAGTGT TTCTGCCATT
GGTATGTCTG GCGGCAAGGA AAGTCCCAGT GCACAAATCA AAATAAAGGT AGATTATGCG
CCTTGGAACT CACCTTTAGC CTATCTAAAT TACGCTCTAC TGATCGGCCT AATTGCTTAT
ATTTTTTGGA AAATGCGCAG TTTGCAGGCT CAAAGGTTGC TAAGTGCGCA TAAAGAAGCC
GTCCAAAGTA AGGGCCGACT GACACTTGCT CTACAAGCAA GCAACAGTGA CGTTTGGGAG
TGGGATGAAA AGAGTGACAC GGTCCAAGCC TCTCGCTTCC ACGATGAGCT AGGTTACGAG
AATAAGACTG GCGCAGTCTC ACGAGAAGAG CACTTATCCC TTATTCATAA TCGTGACAAA
GAGATGTATT TAGCGCGCTG GCACAGCTTT TTAGAGCAAG AAGATCGTGT GTTTGATGTG
ACTTACAGAA TGCGCTCCCA CAACGGGCAT TGGTTGTGGT TTCGTGATGT AGGCAATGTG
ACAGGGGGAG TTGCAAGCGA GCACAACCAG CGCGTTGTAG GGACCTATAC CAACATTACG
GACAGCATTG CAGAGCAAGA AGATTTGCGT CTGTTTGGTG AAGCATACAA GCACACGCGC
GACTGGGTGT TAGTGTGCAA CCGTCACACA GTACCAATGG CGGCAAACCA AGCTTTTTGC
AACACATTTA ATATTGATGA GCAACAGGAC ATTGCCTCGC AACTCAAGCT TGTATATGAC
GATCAACAAG CCGGATTGTT AAGCTTCTGG AGCAAACTCG AAAGTTTAGA AGCAAGTGAA
GATTGGCGCG GTGAAGACCA AATCATGTTA CAAAATGAGG AAGTACGAGA TGTATTGGTA
TACATCAAAG CCGTCGCCTG TATCAACGAT GTCACGGATA TTGACTCCTA TCTGATTATT
TTAAGTGATA TCAGCGAACA TAAGAAAGCT CAGCAAGCAT TAATAAAACT GGCAAATTTT
GATGCACTTA CTGGTTTACC CAACAGAGCG CTATTGCTTG ACCGTGTTGA TCATGCGATT
TATCAAGCTC AGCGTTCAGC AAGCACGTTA GGTTTGTTTT TTATTGATCT GGATAAATTC
AAACAAGTAA ACGACAGTCT GGGACATAAC GCAGGGGATA CACTGCTACA AGAAATTTCC
GCCCGCTTAC TCAATCTGTT ACGCAAAGAG GACACCATTG CCAGATTGGG CGGCGACGAA
TTTGTGGTAC TGATTGAAAA TGTGCATACC ATTGATGACC TCACACACTT GGCTAGCCAA
ATTATTGAAA TCATCGATAC CCCGGTTCAG CTGGAAAACC ATCTAGTGAG CGTATCTTCG
AGTATTGGTA TCGCGCTCTA TCCCGATGAT GCGCAAGATG CACAAGAGCT CTTGCAAAAT
GCGGATATTG CGATGTATCA CGCGAAGGAA AATGGCCGCA GTCACTTTCA ATTTTTCACT
GCCAAAATGA ACGTCCTCGC CCAGCAAAGG TTGGCGTTAG AAAGTGACCT CAAGTACGCC
CATAGCCATC AACAGCTTGA AAATTATTAT CAACCCATTA TTGATATTAG CCGCAATAAA
ATTGCCGGCT TTGAATTACT AATGCGCTGG TTTACCGACA CTGGAAAAGT TTCTCCCGGG
CGTTTTATCC CCGTAGCGGA AGAGCTTGGT TTGATTGAAA GCATGACGTT ACAAGCCATG
GAACGGGCGC TTCCCATGTT TAAGCATTGG CAAGCTAATG GATTCGATGG GTATTTATCC
GTTAATTTAT CGGCACGTCA CTTTGAGTCT CTTCAGTCTA TAAAGGATGT GATCGCCTTT
TTAGCATCGA ACGCCTTACC GGTAGAGATG GTTAGATTTG AAATAACCGA AAGCGCGCTG
ATGAAAGATT ATCAGAAAGC AATTATCTAT ATGAAACACC TACGGGAAGC CGGCTTCAGT
ATTGCCCTAG ATGACTTCGG TACTGGATAT TCGTCTTTAA AATACCTTAA AGAATTTCCG
TTAAGTGTGA TTAAAGTAGA TAAAAGTTTC GTCGATGACA TAGGCATAAA TAAGAATAAC
GAGGCATTAA TTGAAACCAT CTTACGCATG GCACAAAGCC TTGATATGTA TTGCGTGGCA
GAAGGGATAG AAACTAAAGA GCAAGTAGCG TTTTTTAAAG AGCACGATTG CCAATTTCTG
CAAGGGTTCT ACTTTTCGAG ACCTGTTGCC TTGGCTGATA CCTTCGCATT AATAGATGAA
CCTTTGGTTT ATTAA
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| Protein sequence | MFGKYCCLMG WLWILLYSLK ALAVPDVSHA ILKSPVFSQL TTENGLSQDT INVMHTDDQG
FLWLGTDTGL NRYDGYQVDV VEPSNVALGA KTINDLMQDR QGNLWVATFS AGIFKINLSS
GEARLIDKRK SQVIADWQQS FNAIAEDNGG AVWLASDEEI LRYEPHTNTL KSIFSMATNK
IEKGYYIRTL VWHNDLLFFG TNERLFVYSP QLKESFDLGF LFAEFSNEGQ KDVKSLFVDK
SRDTLMIGTV KGLYSVSLAQ ISDYVTQDIA PDPLATLIAS RNIWRIRTSN DSLFYLPTDQ
GVFTYDAQSG QAQHLLLPTD SRLLLSQDVV YDIAFDDSSN LWLGTRSDGV LHWVSTSQSF
QNLLNLNGGR FAKTLSDNNI WALMQVDPSG YWIGTDNGLN YYDFETATVE TFLVSSNELA
QYSESSIHQI LPAEPGYLWL LTGEGVRRFH IQSRKLETIQ VKKTADERIL NEYIQSAIAT
KDGDLFLVYE QGVYYYNLQT KDINALKELN ALATTKLLRG IMPPLPGAPN SLLLSTLGGM
FQWDINLKQL TPVHQLDKQL SANLWPDSWV LDKQNILWVS YPGYGLVGLD GVTFEQRYFF
NKENLLPSNN IYSLQSDGEN AIWISSHNGL LKFDPKFMTL QRYGHAHGLA NEEFNQGANI
KLVNGKLVFG SPKGLVMFTP GTLPNSQKTS QKPKITGIKV SASPYSSKLI DLADSEVHMA
YDDVGLRIRF STLEFANLHS TRYQYRLSGT QDITYPSTPD PQVYFPKLEP GSYVFSVSAI
GMSGGKESPS AQIKIKVDYA PWNSPLAYLN YALLIGLIAY IFWKMRSLQA QRLLSAHKEA
VQSKGRLTLA LQASNSDVWE WDEKSDTVQA SRFHDELGYE NKTGAVSREE HLSLIHNRDK
EMYLARWHSF LEQEDRVFDV TYRMRSHNGH WLWFRDVGNV TGGVASEHNQ RVVGTYTNIT
DSIAEQEDLR LFGEAYKHTR DWVLVCNRHT VPMAANQAFC NTFNIDEQQD IASQLKLVYD
DQQAGLLSFW SKLESLEASE DWRGEDQIML QNEEVRDVLV YIKAVACIND VTDIDSYLII
LSDISEHKKA QQALIKLANF DALTGLPNRA LLLDRVDHAI YQAQRSASTL GLFFIDLDKF
KQVNDSLGHN AGDTLLQEIS ARLLNLLRKE DTIARLGGDE FVVLIENVHT IDDLTHLASQ
IIEIIDTPVQ LENHLVSVSS SIGIALYPDD AQDAQELLQN ADIAMYHAKE NGRSHFQFFT
AKMNVLAQQR LALESDLKYA HSHQQLENYY QPIIDISRNK IAGFELLMRW FTDTGKVSPG
RFIPVAEELG LIESMTLQAM ERALPMFKHW QANGFDGYLS VNLSARHFES LQSIKDVIAF
LASNALPVEM VRFEITESAL MKDYQKAIIY MKHLREAGFS IALDDFGTGY SSLKYLKEFP
LSVIKVDKSF VDDIGINKNN EALIETILRM AQSLDMYCVA EGIETKEQVA FFKEHDCQFL
QGFYFSRPVA LADTFALIDE PLVY
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