Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1665 |
Symbol | |
ID | 4172256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1985405 |
End bp | 1989922 |
Gene Length | 4518 bp |
Protein Length | 1505 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638054675 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_661241 |
Protein GI | 109897986 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.40172 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGTACTT TAACTATTCC ATCCATCTTT TGGTGTCTGT GGCTCGTAAG CGCTACTTTT GGCTTTTTTA ATGCCGCTCA TGCTCAAACA TTTTCATTTG ATAATCTCAC CAAAGCCGAC GGCTTAACGC AAAATACCAT CACCGACATC ATCGAAGATA AGCGCGGCTT TATGTGGTTT GCCACTGCAA ACGGCTTGAG CCGTTTCGAT GGCTATGAAT TTGTCAATTA TCAGCATAAC CCAAATGACG TTAAATCATT ACCTCATGAT TTTATGAGAA CCATGTTAAT AGATCAGGAC GGGGCACTGT GGATCGGCAC GCAAAACGGT CTGGCGCGCT ACAATCCTTT ATCGGATGAT TTCACTCGTT ATAACCAACA AAATAGCAGT TTAAATAACA ATATTATAAA TACCCTAAGT CTCACCAATA CTGGAAAATT GCTAGTCGCT AACGAATCGA CTCTTTACAC GTATTCTAAA CAGACAAATG ATTTCACCCC AGTAGAGGTA TCCTCGGAAC GACTTCCTGC AGAAATTAAA GCTATACTTG TCGAAGATAC TTTTAGCATC ATTGGTAGCT ACGGACACGG CATTTATCTA CTAGAGAATG AGTCAAATAC ACTCTATAAC TTAAACGCTC AAAACCCACT TAACATCACT ATTCCTGCTC AATATTTATT TGATGTAAAG CATTTCGGAA ACAGTTATTG GTTTGCGACC GAGCTTGGCG CCTATATGTG GGATAAAGAA ACTCAAGAGC TACTGCATTT CAACGGGAAC AGCTCGCCAA GCCTTCTTGG AAACGAAGTA CGCAGCATCC AACAAGGCAA TGATGGAGAT ATCTGGCTCG GTACATCAGC TGGTCTAACA ATTGTAAGTA AGACAAAGGA TACTACTAAG CATATTTCAC CAGATAGTGG CTTAGCCAAG CTCCCCTCAC AAAGCGATGC TGGTATATTC CTACTCAGTA TGTTTCGTGA TAGTAACGAT ACCTTATGGC TTGGTTCACA TACCGGAGGG GTGTATCGAT ACAATCAAGA CTCAGCACTT TTTCGTCATT ATGTCTCAAC TGCGTCAAAT ACGAATACAT TGGCTGGCGA TGTAGTGTGG TCAATAAAGC TAGATAGTAA GGGGTTGGTG TGGCTTGCAA CTCAGGCTGG CGGCATATCC GAGTTTAACA CTGATACGGA GCGATTTACG TCCTGGCTTG AAGACTTTGA GTACAGTATT TGGGACATGA CTATCGACGA AAAAGATCGC CTTTGGTTAG CAACAAGTGG AGGAATATAC ATTTATGAGA AAGCCGATAA TGGCGAATTA AGCCTCTTGA AAACCCTATC TAAAGGTAAC TTTTATTATA GGGTTTTGTA CTCTAAAAAT AAGATTTGGC TAAAGTCCCT TGATAATAAA TTAAGATGGA TAGATACAAG TGATTTTAGC GCCCACACCA TACAACTAGG CAATAAAACA TTTAAGACAT TAGATCCAGT ATTCATAGAT AGCGAAGAGC GGTTATGGTT AAGAGGAAAC AATGAACTCC TGCTCTTTGA CATGAAAACG CAAAAACTTG ATCAGCTGTC GAACGATCCG CTACTTACCA GCAACAATTT TAGCGCCGTG GTTGAAACAG ACGAGCAGTT TTGGTTAGCG TCTCTTGAGT TCGGGCTTAT TGTTTTGGAT AAGCAAACTT TCCAAGTTAC GCAAAAAATA AATGTCAGTT CTGGGTTATC TGATAATCAA ATAGTACAAG CTTTGAAAGT AGACGATAGT ATTTGGCTAA CTACCATGGC AGGCGGAATC GAAGAAGTTT CTATTTCATC TGCTCAGGTC ATCCAACAAA TAACGCCTGA GAGACTCAAT TTTAACGATT TCAATGAAGG CGCTGGACTC GTCACTTCAG ATAGGAAAAT TTTATTTGGC GGCTCACAAG GTTTTAACCT GTTCGATCAT GACCAAATAA CTCAGAACAG ACCGCCCTCA AGCAGCAACC TTGCTAATAG CAATATTTCA ATTCCCCCAA TCATTACTCA CCTAGGATTA TTCAATAGAA AAATCGACGT TCATAGTGTA GGCAGCCCGT TACGAAAGCC CATTTATCTT ACCGATCAAC TTACACTTTC TAACAGCTCA AATCACGTTA GCTTAACCTT TGGGCAACTT AATCCGCTAG ATGCTAAAGG GTATTCTTAT CGTTATAAGT TAGGTGGTTA TTCTAATAAA TGGCTGGATG CAGATAAGCG TACGCGAGAA GCGACTTTTA CAAACTTAGA CTTTGGCCGA TATCAATTTG AGGTTCAAAG CCGGCATAAC ATGGACCCAT GGTCTAAGTC CCGAAAGTTG ACAGTCAACA TCGAGCCACC GCTATGGTTA CATCGCAATG CCCTCATTTT TTACTGCATA TTAGTGTTGT TCAGCATATT GGCGGTGGTT AAGCAATATC GCTCTAAGCG TGTGGCGCGC TTGGCAATAA CCGAAAGTGA AGAGCGTTTA AAACTGACAT TATGGAGCAG CGGTGACGAA TTATGGGATT GGGATATATA TCAAGGTCAA GTGTTCCGCT CAAACACGTG GGGGATCATG GACTTTCCTC AAGATGATAT TCGCGTTAAC AGTGCCTACC AAGCTAATAT CCACCAGAAC GATCTGAAGC GGGTTCAGGA TGCGCTTAAC GAACACCTAC AAGATAAAAC CGAGCATTTT GAAGTCACAT ACCGAGCAAG CACCTTTAAA GGTGAATGGT TGTGGGTGCT TGACCGAGGC AAGGTTGTTA GCCGTGATAA CAATAATCAA CCTGTTCGGA TGACGGGTAC ATTTAAAAAT ATTAGCCACC TGAAAGAAGC TGAAGAGCAA TTAAAGCTTT TCAAACGCTC CATTGAAACC ATTTCAGACG GCGTATTTAT TGCAGATACC AGCTTTAGAT ACATTTCTGT CAACAAGGCA TATTGTAAAT ACACTGGCGA AACGCGAGAG CAAGCATTAG CAAGTTATCT CACCTTCCAT CAATATCCTG GGGCTTTTAC CGAAGAAGTA AAAAAATCCC TTCGTCAAAA AGGCAATTGG AACGGAGAGG TCGAATCAAG ACGAATAAAT GGTGAGAAGT ATGAGATGGA ATTGAACATC GATGCCATCA ATGATGAGGA CGGCCGCATT AGCCATTACG TAGGTGTATT TTCTGATATT ACACCTAGAA AAAGCACCGA AAAAGAATTG CTTAAGTTAG CCAATACTGA TCCCCTTACC GACTTACCAA ACCGCTCTTT CTTTCAAGCG AGCCATAATA ATATTGTGCG CCGTGGCACC CAGCATGCGT TGGTATGTTT AGACATGGAC AACTTTAAGA AAATTAACGA CTCATTAGGT CATCAGACCG GCGACTTATT GATTAAACAA ATAGCACGGC GTTTGCAGAA ATTAGCCGGT AAAAGTGCAA CGTGCTACCG CCTTGGAGGC GACGAATTTA GTATACTGCT CGACAAAGAC ACTGACGTGC ACAGTGTGAC GCATTTCACT CAATCCATTT TAGATGACTT GGCCCGCCCT TTTTTAATCA ATCATCAAGA ATTTGTGCTG GGTGCCAGTA TTGGGATCGC GTTTTATCCT GAAGACGGTA GTTCACCACA GGAATTATTG AAAAATGCGG ATACTGCTAT GTATTTCGCC AAGAACGCTG GCGGTAACAA ATATCAATTT TTCAGCGGTG AAATGAATCA AAATGCAGTG CGCCAATTAC AAATAGAGAA TTTGATACGC CACGGCTTAA AGGAAGATTT ATTTAACGTT TATTATCAGC CTAAGATTGA CATCGCTACC GGCAAATTGG TTAGTATGGA AGCCTTAGTG CGCTTTGAAC ATCCAGAGAA GGGCATTGTG AGCCCGGCTC AGTTCATCCC GTTGTCAGAG CAAACTGGAC AAGTCATCGA TATTGGTGAA GTGGTATTAC GAAAAGCTTG TGAAGACACC AAACGTTGGG TTAAAGCGGG GATTTTCACC GGTCGCGTGG CGGTTAATAT ATCAGCGCGT CAATTTGAAT TACCGGATTT AGATGAGAAA ATCGAGAGCA TTTTGCAAAA AGCAGATCTT TCGCCATTGC ATCTAGAGTG TGAAATTACC GAAGGCACAT TGATGCAAGA CCCTGACAAT GCTCTGCGCA TGATGACTCG TTTGCGTGAA AGAGGCATAC ATTTAGCCCT TGATGACTTC GGTACGGGCT ACTCTTCTCT GGCCTATCTA AAACGATTCC CGCTTAACAC CCTTAAAATA GACAAAGCCT TTATTGACGA CATTGCCACC AGCAGCGTTG ACCGGCACAT GACTGCCGCT ATTATCACCA TAGCGCACAA TCTTGGCCTC AAAGTTGTTG CCGAGGGTGT AGAGCTCGAA GAACAGATGT CAATATTACG TCGCTATGAA TGTGAAATGC TACAAGGCTA TCTTTATAGC AAGCCTCTGA GCTCTTCACG CTTCGAACGG TTACTAAAAG AAAATCACCA GCTAAACAAA TTATTGCAAG GTAGCTAA
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Protein sequence | MRTLTIPSIF WCLWLVSATF GFFNAAHAQT FSFDNLTKAD GLTQNTITDI IEDKRGFMWF ATANGLSRFD GYEFVNYQHN PNDVKSLPHD FMRTMLIDQD GALWIGTQNG LARYNPLSDD FTRYNQQNSS LNNNIINTLS LTNTGKLLVA NESTLYTYSK QTNDFTPVEV SSERLPAEIK AILVEDTFSI IGSYGHGIYL LENESNTLYN LNAQNPLNIT IPAQYLFDVK HFGNSYWFAT ELGAYMWDKE TQELLHFNGN SSPSLLGNEV RSIQQGNDGD IWLGTSAGLT IVSKTKDTTK HISPDSGLAK LPSQSDAGIF LLSMFRDSND TLWLGSHTGG VYRYNQDSAL FRHYVSTASN TNTLAGDVVW SIKLDSKGLV WLATQAGGIS EFNTDTERFT SWLEDFEYSI WDMTIDEKDR LWLATSGGIY IYEKADNGEL SLLKTLSKGN FYYRVLYSKN KIWLKSLDNK LRWIDTSDFS AHTIQLGNKT FKTLDPVFID SEERLWLRGN NELLLFDMKT QKLDQLSNDP LLTSNNFSAV VETDEQFWLA SLEFGLIVLD KQTFQVTQKI NVSSGLSDNQ IVQALKVDDS IWLTTMAGGI EEVSISSAQV IQQITPERLN FNDFNEGAGL VTSDRKILFG GSQGFNLFDH DQITQNRPPS SSNLANSNIS IPPIITHLGL FNRKIDVHSV GSPLRKPIYL TDQLTLSNSS NHVSLTFGQL NPLDAKGYSY RYKLGGYSNK WLDADKRTRE ATFTNLDFGR YQFEVQSRHN MDPWSKSRKL TVNIEPPLWL HRNALIFYCI LVLFSILAVV KQYRSKRVAR LAITESEERL KLTLWSSGDE LWDWDIYQGQ VFRSNTWGIM DFPQDDIRVN SAYQANIHQN DLKRVQDALN EHLQDKTEHF EVTYRASTFK GEWLWVLDRG KVVSRDNNNQ PVRMTGTFKN ISHLKEAEEQ LKLFKRSIET ISDGVFIADT SFRYISVNKA YCKYTGETRE QALASYLTFH QYPGAFTEEV KKSLRQKGNW NGEVESRRIN GEKYEMELNI DAINDEDGRI SHYVGVFSDI TPRKSTEKEL LKLANTDPLT DLPNRSFFQA SHNNIVRRGT QHALVCLDMD NFKKINDSLG HQTGDLLIKQ IARRLQKLAG KSATCYRLGG DEFSILLDKD TDVHSVTHFT QSILDDLARP FLINHQEFVL GASIGIAFYP EDGSSPQELL KNADTAMYFA KNAGGNKYQF FSGEMNQNAV RQLQIENLIR HGLKEDLFNV YYQPKIDIAT GKLVSMEALV RFEHPEKGIV SPAQFIPLSE QTGQVIDIGE VVLRKACEDT KRWVKAGIFT GRVAVNISAR QFELPDLDEK IESILQKADL SPLHLECEIT EGTLMQDPDN ALRMMTRLRE RGIHLALDDF GTGYSSLAYL KRFPLNTLKI DKAFIDDIAT SSVDRHMTAA IITIAHNLGL KVVAEGVELE EQMSILRRYE CEMLQGYLYS KPLSSSRFER LLKENHQLNK LLQGS
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