| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1665 |
|---|
| Symbol | |
|---|
| ID | 4172256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1985405 |
|---|
| End bp | 1989922 |
|---|
| Gene Length | 4518 bp |
|---|
| Protein Length | 1505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638054675 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_661241 |
|---|
| Protein GI | 109897986 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.40172 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGTACTT TAACTATTCC ATCCATCTTT TGGTGTCTGT GGCTCGTAAG CGCTACTTTT
GGCTTTTTTA ATGCCGCTCA TGCTCAAACA TTTTCATTTG ATAATCTCAC CAAAGCCGAC
GGCTTAACGC AAAATACCAT CACCGACATC ATCGAAGATA AGCGCGGCTT TATGTGGTTT
GCCACTGCAA ACGGCTTGAG CCGTTTCGAT GGCTATGAAT TTGTCAATTA TCAGCATAAC
CCAAATGACG TTAAATCATT ACCTCATGAT TTTATGAGAA CCATGTTAAT AGATCAGGAC
GGGGCACTGT GGATCGGCAC GCAAAACGGT CTGGCGCGCT ACAATCCTTT ATCGGATGAT
TTCACTCGTT ATAACCAACA AAATAGCAGT TTAAATAACA ATATTATAAA TACCCTAAGT
CTCACCAATA CTGGAAAATT GCTAGTCGCT AACGAATCGA CTCTTTACAC GTATTCTAAA
CAGACAAATG ATTTCACCCC AGTAGAGGTA TCCTCGGAAC GACTTCCTGC AGAAATTAAA
GCTATACTTG TCGAAGATAC TTTTAGCATC ATTGGTAGCT ACGGACACGG CATTTATCTA
CTAGAGAATG AGTCAAATAC ACTCTATAAC TTAAACGCTC AAAACCCACT TAACATCACT
ATTCCTGCTC AATATTTATT TGATGTAAAG CATTTCGGAA ACAGTTATTG GTTTGCGACC
GAGCTTGGCG CCTATATGTG GGATAAAGAA ACTCAAGAGC TACTGCATTT CAACGGGAAC
AGCTCGCCAA GCCTTCTTGG AAACGAAGTA CGCAGCATCC AACAAGGCAA TGATGGAGAT
ATCTGGCTCG GTACATCAGC TGGTCTAACA ATTGTAAGTA AGACAAAGGA TACTACTAAG
CATATTTCAC CAGATAGTGG CTTAGCCAAG CTCCCCTCAC AAAGCGATGC TGGTATATTC
CTACTCAGTA TGTTTCGTGA TAGTAACGAT ACCTTATGGC TTGGTTCACA TACCGGAGGG
GTGTATCGAT ACAATCAAGA CTCAGCACTT TTTCGTCATT ATGTCTCAAC TGCGTCAAAT
ACGAATACAT TGGCTGGCGA TGTAGTGTGG TCAATAAAGC TAGATAGTAA GGGGTTGGTG
TGGCTTGCAA CTCAGGCTGG CGGCATATCC GAGTTTAACA CTGATACGGA GCGATTTACG
TCCTGGCTTG AAGACTTTGA GTACAGTATT TGGGACATGA CTATCGACGA AAAAGATCGC
CTTTGGTTAG CAACAAGTGG AGGAATATAC ATTTATGAGA AAGCCGATAA TGGCGAATTA
AGCCTCTTGA AAACCCTATC TAAAGGTAAC TTTTATTATA GGGTTTTGTA CTCTAAAAAT
AAGATTTGGC TAAAGTCCCT TGATAATAAA TTAAGATGGA TAGATACAAG TGATTTTAGC
GCCCACACCA TACAACTAGG CAATAAAACA TTTAAGACAT TAGATCCAGT ATTCATAGAT
AGCGAAGAGC GGTTATGGTT AAGAGGAAAC AATGAACTCC TGCTCTTTGA CATGAAAACG
CAAAAACTTG ATCAGCTGTC GAACGATCCG CTACTTACCA GCAACAATTT TAGCGCCGTG
GTTGAAACAG ACGAGCAGTT TTGGTTAGCG TCTCTTGAGT TCGGGCTTAT TGTTTTGGAT
AAGCAAACTT TCCAAGTTAC GCAAAAAATA AATGTCAGTT CTGGGTTATC TGATAATCAA
ATAGTACAAG CTTTGAAAGT AGACGATAGT ATTTGGCTAA CTACCATGGC AGGCGGAATC
GAAGAAGTTT CTATTTCATC TGCTCAGGTC ATCCAACAAA TAACGCCTGA GAGACTCAAT
TTTAACGATT TCAATGAAGG CGCTGGACTC GTCACTTCAG ATAGGAAAAT TTTATTTGGC
GGCTCACAAG GTTTTAACCT GTTCGATCAT GACCAAATAA CTCAGAACAG ACCGCCCTCA
AGCAGCAACC TTGCTAATAG CAATATTTCA ATTCCCCCAA TCATTACTCA CCTAGGATTA
TTCAATAGAA AAATCGACGT TCATAGTGTA GGCAGCCCGT TACGAAAGCC CATTTATCTT
ACCGATCAAC TTACACTTTC TAACAGCTCA AATCACGTTA GCTTAACCTT TGGGCAACTT
AATCCGCTAG ATGCTAAAGG GTATTCTTAT CGTTATAAGT TAGGTGGTTA TTCTAATAAA
TGGCTGGATG CAGATAAGCG TACGCGAGAA GCGACTTTTA CAAACTTAGA CTTTGGCCGA
TATCAATTTG AGGTTCAAAG CCGGCATAAC ATGGACCCAT GGTCTAAGTC CCGAAAGTTG
ACAGTCAACA TCGAGCCACC GCTATGGTTA CATCGCAATG CCCTCATTTT TTACTGCATA
TTAGTGTTGT TCAGCATATT GGCGGTGGTT AAGCAATATC GCTCTAAGCG TGTGGCGCGC
TTGGCAATAA CCGAAAGTGA AGAGCGTTTA AAACTGACAT TATGGAGCAG CGGTGACGAA
TTATGGGATT GGGATATATA TCAAGGTCAA GTGTTCCGCT CAAACACGTG GGGGATCATG
GACTTTCCTC AAGATGATAT TCGCGTTAAC AGTGCCTACC AAGCTAATAT CCACCAGAAC
GATCTGAAGC GGGTTCAGGA TGCGCTTAAC GAACACCTAC AAGATAAAAC CGAGCATTTT
GAAGTCACAT ACCGAGCAAG CACCTTTAAA GGTGAATGGT TGTGGGTGCT TGACCGAGGC
AAGGTTGTTA GCCGTGATAA CAATAATCAA CCTGTTCGGA TGACGGGTAC ATTTAAAAAT
ATTAGCCACC TGAAAGAAGC TGAAGAGCAA TTAAAGCTTT TCAAACGCTC CATTGAAACC
ATTTCAGACG GCGTATTTAT TGCAGATACC AGCTTTAGAT ACATTTCTGT CAACAAGGCA
TATTGTAAAT ACACTGGCGA AACGCGAGAG CAAGCATTAG CAAGTTATCT CACCTTCCAT
CAATATCCTG GGGCTTTTAC CGAAGAAGTA AAAAAATCCC TTCGTCAAAA AGGCAATTGG
AACGGAGAGG TCGAATCAAG ACGAATAAAT GGTGAGAAGT ATGAGATGGA ATTGAACATC
GATGCCATCA ATGATGAGGA CGGCCGCATT AGCCATTACG TAGGTGTATT TTCTGATATT
ACACCTAGAA AAAGCACCGA AAAAGAATTG CTTAAGTTAG CCAATACTGA TCCCCTTACC
GACTTACCAA ACCGCTCTTT CTTTCAAGCG AGCCATAATA ATATTGTGCG CCGTGGCACC
CAGCATGCGT TGGTATGTTT AGACATGGAC AACTTTAAGA AAATTAACGA CTCATTAGGT
CATCAGACCG GCGACTTATT GATTAAACAA ATAGCACGGC GTTTGCAGAA ATTAGCCGGT
AAAAGTGCAA CGTGCTACCG CCTTGGAGGC GACGAATTTA GTATACTGCT CGACAAAGAC
ACTGACGTGC ACAGTGTGAC GCATTTCACT CAATCCATTT TAGATGACTT GGCCCGCCCT
TTTTTAATCA ATCATCAAGA ATTTGTGCTG GGTGCCAGTA TTGGGATCGC GTTTTATCCT
GAAGACGGTA GTTCACCACA GGAATTATTG AAAAATGCGG ATACTGCTAT GTATTTCGCC
AAGAACGCTG GCGGTAACAA ATATCAATTT TTCAGCGGTG AAATGAATCA AAATGCAGTG
CGCCAATTAC AAATAGAGAA TTTGATACGC CACGGCTTAA AGGAAGATTT ATTTAACGTT
TATTATCAGC CTAAGATTGA CATCGCTACC GGCAAATTGG TTAGTATGGA AGCCTTAGTG
CGCTTTGAAC ATCCAGAGAA GGGCATTGTG AGCCCGGCTC AGTTCATCCC GTTGTCAGAG
CAAACTGGAC AAGTCATCGA TATTGGTGAA GTGGTATTAC GAAAAGCTTG TGAAGACACC
AAACGTTGGG TTAAAGCGGG GATTTTCACC GGTCGCGTGG CGGTTAATAT ATCAGCGCGT
CAATTTGAAT TACCGGATTT AGATGAGAAA ATCGAGAGCA TTTTGCAAAA AGCAGATCTT
TCGCCATTGC ATCTAGAGTG TGAAATTACC GAAGGCACAT TGATGCAAGA CCCTGACAAT
GCTCTGCGCA TGATGACTCG TTTGCGTGAA AGAGGCATAC ATTTAGCCCT TGATGACTTC
GGTACGGGCT ACTCTTCTCT GGCCTATCTA AAACGATTCC CGCTTAACAC CCTTAAAATA
GACAAAGCCT TTATTGACGA CATTGCCACC AGCAGCGTTG ACCGGCACAT GACTGCCGCT
ATTATCACCA TAGCGCACAA TCTTGGCCTC AAAGTTGTTG CCGAGGGTGT AGAGCTCGAA
GAACAGATGT CAATATTACG TCGCTATGAA TGTGAAATGC TACAAGGCTA TCTTTATAGC
AAGCCTCTGA GCTCTTCACG CTTCGAACGG TTACTAAAAG AAAATCACCA GCTAAACAAA
TTATTGCAAG GTAGCTAA
|
|---|
| Protein sequence | MRTLTIPSIF WCLWLVSATF GFFNAAHAQT FSFDNLTKAD GLTQNTITDI IEDKRGFMWF
ATANGLSRFD GYEFVNYQHN PNDVKSLPHD FMRTMLIDQD GALWIGTQNG LARYNPLSDD
FTRYNQQNSS LNNNIINTLS LTNTGKLLVA NESTLYTYSK QTNDFTPVEV SSERLPAEIK
AILVEDTFSI IGSYGHGIYL LENESNTLYN LNAQNPLNIT IPAQYLFDVK HFGNSYWFAT
ELGAYMWDKE TQELLHFNGN SSPSLLGNEV RSIQQGNDGD IWLGTSAGLT IVSKTKDTTK
HISPDSGLAK LPSQSDAGIF LLSMFRDSND TLWLGSHTGG VYRYNQDSAL FRHYVSTASN
TNTLAGDVVW SIKLDSKGLV WLATQAGGIS EFNTDTERFT SWLEDFEYSI WDMTIDEKDR
LWLATSGGIY IYEKADNGEL SLLKTLSKGN FYYRVLYSKN KIWLKSLDNK LRWIDTSDFS
AHTIQLGNKT FKTLDPVFID SEERLWLRGN NELLLFDMKT QKLDQLSNDP LLTSNNFSAV
VETDEQFWLA SLEFGLIVLD KQTFQVTQKI NVSSGLSDNQ IVQALKVDDS IWLTTMAGGI
EEVSISSAQV IQQITPERLN FNDFNEGAGL VTSDRKILFG GSQGFNLFDH DQITQNRPPS
SSNLANSNIS IPPIITHLGL FNRKIDVHSV GSPLRKPIYL TDQLTLSNSS NHVSLTFGQL
NPLDAKGYSY RYKLGGYSNK WLDADKRTRE ATFTNLDFGR YQFEVQSRHN MDPWSKSRKL
TVNIEPPLWL HRNALIFYCI LVLFSILAVV KQYRSKRVAR LAITESEERL KLTLWSSGDE
LWDWDIYQGQ VFRSNTWGIM DFPQDDIRVN SAYQANIHQN DLKRVQDALN EHLQDKTEHF
EVTYRASTFK GEWLWVLDRG KVVSRDNNNQ PVRMTGTFKN ISHLKEAEEQ LKLFKRSIET
ISDGVFIADT SFRYISVNKA YCKYTGETRE QALASYLTFH QYPGAFTEEV KKSLRQKGNW
NGEVESRRIN GEKYEMELNI DAINDEDGRI SHYVGVFSDI TPRKSTEKEL LKLANTDPLT
DLPNRSFFQA SHNNIVRRGT QHALVCLDMD NFKKINDSLG HQTGDLLIKQ IARRLQKLAG
KSATCYRLGG DEFSILLDKD TDVHSVTHFT QSILDDLARP FLINHQEFVL GASIGIAFYP
EDGSSPQELL KNADTAMYFA KNAGGNKYQF FSGEMNQNAV RQLQIENLIR HGLKEDLFNV
YYQPKIDIAT GKLVSMEALV RFEHPEKGIV SPAQFIPLSE QTGQVIDIGE VVLRKACEDT
KRWVKAGIFT GRVAVNISAR QFELPDLDEK IESILQKADL SPLHLECEIT EGTLMQDPDN
ALRMMTRLRE RGIHLALDDF GTGYSSLAYL KRFPLNTLKI DKAFIDDIAT SSVDRHMTAA
IITIAHNLGL KVVAEGVELE EQMSILRRYE CEMLQGYLYS KPLSSSRFER LLKENHQLNK
LLQGS
|
|---|
| |