| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1658 |
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| Symbol | |
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| ID | 4172249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1975424 |
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| End bp | 1977367 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054668 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_661234 |
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| Protein GI | 109897979 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.95456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGATT TTACCCTAGC GGATTTTCAT TTTTTGCGCC CTTTGTGGTT ATTAGCCATT
ATTCCTTTGT TTTTACTCAT TGCGCTGTTG AAACGCATGA ACCAACAACG CTCAGGGTGG
CAATCTGTTT TACCTTCACA CCTGTACCAA CACCTTGTCG CGAATAATGG GGTTAAATCT
TCGAAACCGC CTTTATACGT ATTAGTCGTC GCTTGGACCT TAGCCTGCTT AGCCCTCGCG
GGACCAACGT GGCAGCGCTT GCCTCAGCCG GTATATCAGT TAAACAGCGG AAAAGTCGTG
GTACTGGATA TGTCATTATC AATGCGAGCA ACAGATGTCA CGCCGAACCG TCTAACTCGT
GCTAAGTACA AGGCTATTGA TTTAGTCAAG GCCATCGCCG AAGGTGAAAC CGGCCTCGTT
GCTTATGCTG GTGATGCCTT CACTATTAGC CCGCTAAGTT CAGATGGGCA GAATTTAACC
GCTTTGATCC CCAGCCTGTC GCCCGAAATT ATGCCCGTTG CCGGTAGCGA GCCGTTTTTA
GGCTTGGAAT CAGCGATCGC GCTATTACGC AATGCTGGTT ACCAGCAAGG TGAAATATTT
TGGATAACCG ATGGCATTGA AAATACGCAA GTCGCTGAGG TGAGTAAATT GCTTGAGGAT
TCACCTTATC GCCTTTCCAT ATTGTCGATT GGTACACCCG ATGGAGCTCC TATTCAATTG
GTTAATGGTG ACTTTTTAAA AGACAATAGT GGCGCTGTAG TCGTGCCTCG ATTACGGGCA
AGTAACCTGC AAACCCTCGC ACGCAAAGGG GGGGGCAGGT ATATTGCGAT GCGCACAGAT
GATAGCGATA TCGACTACCT TAAAAACCAA ACTGTGCTCT CGTCACAAGA AGATAAGCCT
GGCGAAACCG ATGACAAGTT TGGTGATAAG TGGCAAGAGA TGGGCCCTTA TCTGTTAATA
CTGTTATTAC CCCTAGCCGC GTATGGCTTT CGTCGCGGGT TACTAAGCAT ATTTGCAGTT
TTCATGTTAT TGCCCGGGTA TACACCGCCC GCCGGTGCAA CTTGGTGGGA TGACATGTGG
CAAACCGCAG ATCAGCAAGG TCAACACGCC TTTCAAACTG AGAATTATGA AGAAGCAGCT
AAACACTTTG ACGACCCTAT GTGGCGAGGA ACAGCTGCTT ACAAAGCGCA AGACTACGCT
GCTGCACTTG ATGCATTTCG CGCAGCAAGT GGCGCGCAAG CCCGTTACAA CGAGGGAAAT
ACTCTTGCCC AGCTGGGTGA AATTGAGGAG GCCATTAAAG CCTACGATAG AGCACTGGCG
GTTGATCCTG ATCACGAGGA TGCAAAAGCA AACAAGGCAT TGCTCGAACA GCAAAAGCAA
CAGGACCAGC AAAATCAAGA ACAGCAGGAA AATGCTGAAC AACAAGAGCA AGACGAAAAC
CAGCAAGGTG AGAACAACCA ATCTGGCGAT CAACAAGAGG GCCAAAATGC CGATAACAGC
CCTGAGCAAT CATCACAGGA AAACCAAAAG CAATCGCAAA CGAATAATGA CTCGCAACAA
GGTGATAGCG AGCCATCCAC TTCTGAGGAA CAACCTGAGC AGAACGAGCA AGATAGTGAA
AACAACAGTC AGCAAGACGG TGCACAGTCT TCTCAACAAG AGGAGCGAGA GCAGTCTCAA
GATGAGCAAT CATCTCAACC TGCTTCTATG GATGAAAATG AGCAAGCTGA GGGACAAGAT
GCGTCTCAGC TGCAGGCGGC TTCCATGGGC GCACAAGCAC CACAAGAACT TACTGACGAA
CAGAAAGAAC AAATGCAACG CATGCAAACA TTGCTCAACC GCGTTCCTGA CGATCCAGCA
TTTTTATTAA AACGAAAAAT GCAGATAGAA AATCAAAAGC GAAGACAACA ACGTACACCG
ACTCAACGAC AAAGGAACTG GTAG
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| Protein sequence | MFDFTLADFH FLRPLWLLAI IPLFLLIALL KRMNQQRSGW QSVLPSHLYQ HLVANNGVKS
SKPPLYVLVV AWTLACLALA GPTWQRLPQP VYQLNSGKVV VLDMSLSMRA TDVTPNRLTR
AKYKAIDLVK AIAEGETGLV AYAGDAFTIS PLSSDGQNLT ALIPSLSPEI MPVAGSEPFL
GLESAIALLR NAGYQQGEIF WITDGIENTQ VAEVSKLLED SPYRLSILSI GTPDGAPIQL
VNGDFLKDNS GAVVVPRLRA SNLQTLARKG GGRYIAMRTD DSDIDYLKNQ TVLSSQEDKP
GETDDKFGDK WQEMGPYLLI LLLPLAAYGF RRGLLSIFAV FMLLPGYTPP AGATWWDDMW
QTADQQGQHA FQTENYEEAA KHFDDPMWRG TAAYKAQDYA AALDAFRAAS GAQARYNEGN
TLAQLGEIEE AIKAYDRALA VDPDHEDAKA NKALLEQQKQ QDQQNQEQQE NAEQQEQDEN
QQGENNQSGD QQEGQNADNS PEQSSQENQK QSQTNNDSQQ GDSEPSTSEE QPEQNEQDSE
NNSQQDGAQS SQQEEREQSQ DEQSSQPASM DENEQAEGQD ASQLQAASMG AQAPQELTDE
QKEQMQRMQT LLNRVPDDPA FLLKRKMQIE NQKRRQQRTP TQRQRNW
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