Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1652 |
Symbol | |
ID | 4174081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1968769 |
End bp | 1969989 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638054662 |
Product | diguanylate phosphodiesterase |
Protein accession | YP_661228 |
Protein GI | 109897973 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3434] Predicted signal transduction protein containing EAL and modified HD-GYP domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTTTT ATGCCGCTAG GCAACCGATA TTACATGCAG ATAAAACACT GTTTGCTTAT GAATTGTTAT TTCGGGATAG TTTGGAGAAT ACCTTTCCAA ATATAAATGA AGATGAAGCT ACAGCGAAAA TGGTCGCTGG GCTTCAATTC AATCTAGGGT TAGACAGCTT GTTGCCTGAC ACGCTAGCGT TCATAAACTT TACACATAAT TCGTTATTAG ACGGGTATCC TTTGATGCTA CCTAAAGAGA AGATTGTAGT AGAGATTTTA GAAACGGTTA AACCAGGTAA AAAACTACTT AATGCGTGTA TCGATCTAAA GAAAAAGGGC TATATCGTTG CCCTTGATGA CTATGTTCAC CAAGGAGTCT GGCTGCATTT CTTTCCTTAT ATCGATATTA TTAAAATTGA CTATCAAGAT ACCTCACATG AGCAAATTCT AAAGATAATA GAAGCGATAA AGCCCTTCCC CAAGGTAAAA TTGTTAGCAG AAAAGATTGA AACCCACCAA GAATACTTAC AAGCACTGGA GTATGGCTGT TGTTATTTTC AAGGCTACTT TTTCAGTAAA CCAGAGATTA TAAAAAACAC AGCCTTAACG CCTTCGCAAA TGTCCATAGC GAAATTAATG GGGGAAATGG CCAAAGAAGA CCCCAAAATT GAGATTATCA CTCAAGCGTT TGAATCTGAT GTGAGTCTCT CTTTTAAATT GCTGCGTTAT GCCCAATCGC CGATTTTTAA ACGCACCAAA CAAATTGAGA CGATAAAACA AGCTATTGTG GTGTTGGGGC AAACTGAGCT TAGGCGTTTT GTGTCGTTAC TTTTTACTGC TCAATTCAGT GAAGGCAAGC CTGCTGAGCT TACCGTGATG TCACTTTCGC GGGCTCGTTA TTGTGAACTA CTCACAGAAT ATTCCAATCA ACGCGACGGC GTGGCATCCG CTTTCTTGGT TGGGCTTTTG TCATTACTTG ACGCCATGTT GGATGCTGAT ATCGCAGACC TTATGGAAAA ACTGCCTATA TCTCAGAATA TCAAAGACAG TATCGTGCTA CGTCAGGGGG AACAGGCCAA ATACTTAATG CTGAGCGAAT TTTTTGAGGA AGGTCGATGG AGTGATGTCA ATCGCCTGTG TGAAAATCTC GACGTTAATT TTGATGATGC ATTTTCAATG TTTCAACAAT CTCAACTATG GGCAAAAGAA AGACTCCAGG CTTTAAAGTA A
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Protein sequence | MNFYAARQPI LHADKTLFAY ELLFRDSLEN TFPNINEDEA TAKMVAGLQF NLGLDSLLPD TLAFINFTHN SLLDGYPLML PKEKIVVEIL ETVKPGKKLL NACIDLKKKG YIVALDDYVH QGVWLHFFPY IDIIKIDYQD TSHEQILKII EAIKPFPKVK LLAEKIETHQ EYLQALEYGC CYFQGYFFSK PEIIKNTALT PSQMSIAKLM GEMAKEDPKI EIITQAFESD VSLSFKLLRY AQSPIFKRTK QIETIKQAIV VLGQTELRRF VSLLFTAQFS EGKPAELTVM SLSRARYCEL LTEYSNQRDG VASAFLVGLL SLLDAMLDAD IADLMEKLPI SQNIKDSIVL RQGEQAKYLM LSEFFEEGRW SDVNRLCENL DVNFDDAFSM FQQSQLWAKE RLQALK
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