Gene Patl_1652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1652 
Symbol 
ID4174081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1968769 
End bp1969989 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content40% 
IMG OID638054662 
Productdiguanylate phosphodiesterase 
Protein accessionYP_661228 
Protein GI109897973 
COG category[T] Signal transduction mechanisms 
COG ID[COG3434] Predicted signal transduction protein containing EAL and modified HD-GYP domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTTT ATGCCGCTAG GCAACCGATA TTACATGCAG ATAAAACACT GTTTGCTTAT 
GAATTGTTAT TTCGGGATAG TTTGGAGAAT ACCTTTCCAA ATATAAATGA AGATGAAGCT
ACAGCGAAAA TGGTCGCTGG GCTTCAATTC AATCTAGGGT TAGACAGCTT GTTGCCTGAC
ACGCTAGCGT TCATAAACTT TACACATAAT TCGTTATTAG ACGGGTATCC TTTGATGCTA
CCTAAAGAGA AGATTGTAGT AGAGATTTTA GAAACGGTTA AACCAGGTAA AAAACTACTT
AATGCGTGTA TCGATCTAAA GAAAAAGGGC TATATCGTTG CCCTTGATGA CTATGTTCAC
CAAGGAGTCT GGCTGCATTT CTTTCCTTAT ATCGATATTA TTAAAATTGA CTATCAAGAT
ACCTCACATG AGCAAATTCT AAAGATAATA GAAGCGATAA AGCCCTTCCC CAAGGTAAAA
TTGTTAGCAG AAAAGATTGA AACCCACCAA GAATACTTAC AAGCACTGGA GTATGGCTGT
TGTTATTTTC AAGGCTACTT TTTCAGTAAA CCAGAGATTA TAAAAAACAC AGCCTTAACG
CCTTCGCAAA TGTCCATAGC GAAATTAATG GGGGAAATGG CCAAAGAAGA CCCCAAAATT
GAGATTATCA CTCAAGCGTT TGAATCTGAT GTGAGTCTCT CTTTTAAATT GCTGCGTTAT
GCCCAATCGC CGATTTTTAA ACGCACCAAA CAAATTGAGA CGATAAAACA AGCTATTGTG
GTGTTGGGGC AAACTGAGCT TAGGCGTTTT GTGTCGTTAC TTTTTACTGC TCAATTCAGT
GAAGGCAAGC CTGCTGAGCT TACCGTGATG TCACTTTCGC GGGCTCGTTA TTGTGAACTA
CTCACAGAAT ATTCCAATCA ACGCGACGGC GTGGCATCCG CTTTCTTGGT TGGGCTTTTG
TCATTACTTG ACGCCATGTT GGATGCTGAT ATCGCAGACC TTATGGAAAA ACTGCCTATA
TCTCAGAATA TCAAAGACAG TATCGTGCTA CGTCAGGGGG AACAGGCCAA ATACTTAATG
CTGAGCGAAT TTTTTGAGGA AGGTCGATGG AGTGATGTCA ATCGCCTGTG TGAAAATCTC
GACGTTAATT TTGATGATGC ATTTTCAATG TTTCAACAAT CTCAACTATG GGCAAAAGAA
AGACTCCAGG CTTTAAAGTA A
 
Protein sequence
MNFYAARQPI LHADKTLFAY ELLFRDSLEN TFPNINEDEA TAKMVAGLQF NLGLDSLLPD 
TLAFINFTHN SLLDGYPLML PKEKIVVEIL ETVKPGKKLL NACIDLKKKG YIVALDDYVH
QGVWLHFFPY IDIIKIDYQD TSHEQILKII EAIKPFPKVK LLAEKIETHQ EYLQALEYGC
CYFQGYFFSK PEIIKNTALT PSQMSIAKLM GEMAKEDPKI EIITQAFESD VSLSFKLLRY
AQSPIFKRTK QIETIKQAIV VLGQTELRRF VSLLFTAQFS EGKPAELTVM SLSRARYCEL
LTEYSNQRDG VASAFLVGLL SLLDAMLDAD IADLMEKLPI SQNIKDSIVL RQGEQAKYLM
LSEFFEEGRW SDVNRLCENL DVNFDDAFSM FQQSQLWAKE RLQALK