Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1632 |
Symbol | |
ID | 4174061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1941283 |
End bp | 1943394 |
Gene Length | 2112 bp |
Protein Length | 703 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054642 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_661208 |
Protein GI | 109897953 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.141024 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCCTA TTACTAAATC ATTTCAGTAT GGTCAGCATA CTGTCACGCT AGAAACGGGC GTAATCGCTC GTCAAGCAAC CGCTGCTGTT ATGGCAAGCA TGGACGACAC ATCAGTGTTG GTTTCTGTTG TTGGTAAAAA AGACACCAAG CCAGGCCAAG ACTTCTTCCC GTTAACGGTT AACTACCAAG AAAGAACGTA CGCTGCGGGT AAAATCCCAG GTGGTTTCTT TAAGCGTGAA GGTCGCCCTT CTGAATACGA AACACTCACG TCTCGTTTGA TTGACCGTCC AATTCGTCCA TTATTCCCTG ACGGGTTCAT GAACGAAGTA CAAATCATAG TGACGGTTGT TTCAGCTAAC CCTGAAATTC CAACTGACAT CATCTCGCTA ATCGGTACGT CTGCCGCGCT TGCTATCTCA GGTATGCCTT TCAATGGTCC TGTTGGTGCT GCGCGTGTTG GTTACACTGA TGGCCAATAT GTACTTAATA CACGTACTTC TGAGCTTGAA ATTAGCCAAC TAGACTTAGT GGTTGCCGGT ACCAAAGGCG CAGTATTGAT GGTTGAGTCA GAAGCTGAAG TATTGTCTGA AGACGTGATG CTAGGTGCCG TTATGTTCGG TCACGAGCAA ATGCAAACTG TTGTTAATGC TGTGACTGAA TTTGCTGCTG AAGTTAACAC GCCTAAGTGG GATTGGGTTG CTGAGCCTGC TAACGTCACA CTTAAAGACA AAATTAAAGC ACTCGCTGAA GCTGAAATGA CAGAGGCGTA TCAAATCTCT GACAAGATGG CGCGTAAAGA CGCTATCGTT GCTCTAACGG ACAAAACCGT TGCTGCGATT GTTGAAGCAG ATGCAGAGCA AGACGCTAAA GAAGTATCTG AGCTTTTACA TGAGCTTGAA AGTGACGTAG TACGTTCACG TATTCTTGCT GGTCAACCAC GTATCGATGG TCGCGACCCT GCGATGATCC GTGCACTTGA CGTAGCAACG GGTATTTTGC CACGTACTCA CGGTTCTGCT TTGTTCACTC GTGGTGAAAC ACAAGCCATC GTTGCCGCTA CCCTAGGGAC TGAGCGTGAC GCACAGATGA TTGACGGTCT AAACGGTAAA GTGGATAGCC GCTTCATGTT GCATTACAAC TTCCCTCCTT ACTGTGTAGG CGAGACAGGT TTTGTTGGTT CACCTAAGCG TCGCGAAATA GGCCACGGTC GTCTAGCAAA ACGTGGTATT CAAGCGGTTA TGCCGTCTGA AAAAGAATTC CCGTACGTAG TACGTGTGGT GTCTGAAATC ACTGAATCAA ACGGTTCGTC TTCTATGGCA TCAGTTTGTG GTACTTCTTT GGCATTGATG GACGCGGGTG TTCCAATTAA AGCATCAGTA GCTGGTATTG CTATGGGTCT TGTGAAAAAC GATGAAAACT TCGTTGTTCT TTCAGACATC TTGGGTGACG AAGATCACCT TGGTGACATG GACTTTAAAG TAGCCGGTAC CACTGAAGGC ATCACTGCGC TTCAAATGGA TATCAAAATC GAAGGTATCA CTCAAGAAAT CATGCAAGTT GCTTTGAAAC AAGCAAAAGA AGCGCGTTTG CATATTCTAG GTGTGATGGA CCAAGCGATT TCTGGTCACC GTGATGAAAT GTCTGAATTC GCTCCGCGTA TTTACACATT GAAAATCGAC CAAGATAAAA TCCGTGACGT TATCGGTAAA GGCGGCGCAA TGATCCGTTC TATTACTGAA GCATCTGACA CTAACATCGA AATCGAAGAT GATGGCACAA TCAAAATCTT CGCTACCGAG CGTGCTAAAG CTGATATCGC TATCAGCAAA ATTGAGCAAG TAACGGCTGA TGTTGAAGCA GGCAAAACCT ACGAAGGTAA AGTGACGCGT ATCGTTGATT TCGGTGCGTT CGTTGAAATC TTGCCGGGTA AGGAAGGTCT AGTACACATT TCACAAATCG CTCATGAGCG TGTGAATAAA GTGGCTGATC ATCTTAGCGA AGGTCAAATC ATCAACGTTA AAGTGATGGA AATTGACCGT CAAAACCGTG TTCGTTTGAG TATTAAAGAA TTGCTAGAAA AGCCAGCAGC ACCTGCTGAA GGCAACGAGT AA
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Protein sequence | MTPITKSFQY GQHTVTLETG VIARQATAAV MASMDDTSVL VSVVGKKDTK PGQDFFPLTV NYQERTYAAG KIPGGFFKRE GRPSEYETLT SRLIDRPIRP LFPDGFMNEV QIIVTVVSAN PEIPTDIISL IGTSAALAIS GMPFNGPVGA ARVGYTDGQY VLNTRTSELE ISQLDLVVAG TKGAVLMVES EAEVLSEDVM LGAVMFGHEQ MQTVVNAVTE FAAEVNTPKW DWVAEPANVT LKDKIKALAE AEMTEAYQIS DKMARKDAIV ALTDKTVAAI VEADAEQDAK EVSELLHELE SDVVRSRILA GQPRIDGRDP AMIRALDVAT GILPRTHGSA LFTRGETQAI VAATLGTERD AQMIDGLNGK VDSRFMLHYN FPPYCVGETG FVGSPKRREI GHGRLAKRGI QAVMPSEKEF PYVVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKASV AGIAMGLVKN DENFVVLSDI LGDEDHLGDM DFKVAGTTEG ITALQMDIKI EGITQEIMQV ALKQAKEARL HILGVMDQAI SGHRDEMSEF APRIYTLKID QDKIRDVIGK GGAMIRSITE ASDTNIEIED DGTIKIFATE RAKADIAISK IEQVTADVEA GKTYEGKVTR IVDFGAFVEI LPGKEGLVHI SQIAHERVNK VADHLSEGQI INVKVMEIDR QNRVRLSIKE LLEKPAAPAE GNE
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