| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1630 |
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| Symbol | |
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| ID | 4174059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1938617 |
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| End bp | 1939288 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054640 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_661206 |
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| Protein GI | 109897951 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.427552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAGCCA TCATAGATAC TTTTATCGCG CCGCCATGTG ATGAGGCGGT CACGGTTTTG
TATCAAGATG AATACCTGTT AGCGGTAAAT AAACCTAGTG GGTTACTGAG TTTGTCGGGT
AAAAACCCGT TGAATAAAGA TTCAGTGCAT TACCGAATTG TGCAGGAATT TCCTACTGCT
TTGATGGCAC ATCGTCTGGA CTTTGGCACG TCAGGTGTGC TGCTGCTGGC CCTTGATAAA
AATAGTAATG CTCAGTTAAC TAAGCAGTTT CAGGCACGAA CCGTGAAGAA GCGTTACACG
GCTGTGCTAC TAGGAAAAAT TGAGCAAACC GAGGGGAGGG TATCAGTGCC TATCGCGAAA
GATCCGCCTA ATTTCCCGCG ACAAAAAATC TGCTATGACA CGGGTAAAGA AGCTATAAGT
CATTATCGTG TCATTGAGTA TGTTGACAAC CCGCTGTGCA CTCGCGTTGA GTTCACCCCT
GAAACGGGGC GCACTCATCA ATTGCGGCTG CACAGCTTAG CGATGGGCCA TCCCATTTTA
GGATGTGATT TATACGGCAA TAGCCACAGT GTGCAAATGG CCTCCAGACT TTTGCTACAT
GCCTCTCATA TCAAATTTAC CCACCCTTAC AGCGGAAAAA GCATGGAAAT AGAAGCGCCT
ATACCGTTTT AA
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| Protein sequence | MTAIIDTFIA PPCDEAVTVL YQDEYLLAVN KPSGLLSLSG KNPLNKDSVH YRIVQEFPTA
LMAHRLDFGT SGVLLLALDK NSNAQLTKQF QARTVKKRYT AVLLGKIEQT EGRVSVPIAK
DPPNFPRQKI CYDTGKEAIS HYRVIEYVDN PLCTRVEFTP ETGRTHQLRL HSLAMGHPIL
GCDLYGNSHS VQMASRLLLH ASHIKFTHPY SGKSMEIEAP IPF
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