| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1628 |
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| Symbol | |
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| ID | 4174057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1935321 |
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| End bp | 1936850 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054638 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_661204 |
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| Protein GI | 109897949 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00231354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGTTA TCCGTCAACA GGACTTTATC GATAGCATTG AAGATTCTTT GCAGTTTATT
TCCTATTATC ATCCGTTAGA TTATATCAAG GCCGTTGAAA AAGCCTACAA CAAGGAAGAA
AGTCAGGCCG CAAAAGACGC TATGGCACAA ATACTGATTA ATTCACGTAT GTCAGCCGAA
GGTAAGCGTC CGTTATGTCA AGATACGGGC ATAGTGACCT GTTTCGTTAA AATAGGTATG
GGTGTGCAGT GGGATAAAAC TGACCTGACG GTGCAGCAAA TGGTTGATGA GGGAACGCGT
CGCGCTTATA ACAATAAAGA AAATCCGTTG CGTGCTTCTA TTGTTTCAGA TCCAGCGGGT
GCGCGTAAAA ATACCAAAGA CAATACGCCA GCGGTTGTGC ATATCGATAC CGTACCAGGC
GAAGGTATTG AAGTGATGAT CGCGGCCAAA GGTGGCGGTT CAGAAAATAA ATCTAAAATG
GTGATGTTAA ACCCCAATGA CAGCATTGCA GATTGGGTGG TGAAAACCTT ACCGACTATG
GGGGCAGGGT GGTGTCCACC GGGCATGCTG GGTATAGGCA TAGGTGGTAC CGCTGAAAAA
TCAGCCGTTC TTGCCAAAGA AAGCTTGATG GATCCGGTTG ATATCCAGGA GCTAATGGAC
AGAGGCGCAC AAACGACCGA AGAAAAATTG CGTCTTGAAA TCTTCAAAAA AGTGAATGAT
TTAGGGATAG GTGCACAAGG TTTGGGCGGT TTAACCACCG TGGTTGATAT TAAAATTAAA
TCATTGCCAA CCCATGCCGC TTCATTGCCA GTGACGATGA TCCCTAACTG TGCAGCAACC
CGCCATGCGC ATTTCCATCT TGATGGTACT GGTGCAGCAG AATTTACACC GCCTGATTTA
AACGATTGGC CTGAAGTGAC GTGGGAAGTG AGTAAAGACA CCCGCCGCGT TAATTTAGAT
GACGTCAAAA AAGAAGATAT TCAAGAATGG AAAGTAGGCG AAACGGTATT GCTTTCTGGC
AAGATGTTAA CCGGACGCGA TGCCGCTCAC AAACGTATTC AAACCATGCT CGATAATGGA
GAAGGCTTGC CAGATGGTGT GGATTTGACC GACCGCTTCA TTTATTACGT GGGCCCAGTT
GATGCAGTAG GTGACGAAGT TGTGGGACCT GCAGGCCCAA CAACGGCTAC CCGTATGGAC
AAATTCACTG ATTTGATGCT TGAACAAACT GGCCTTATTG GCATGATTGG TAAAGCCGAA
CGTGGCCCAG CTACGGTTAG CAGTATTGCC AAGCACAAAG CGGTCTATTT GATGGCCGTG
GGCGGTGCCG CTTACTTGGT GTCTAAAGCG ATTAAGAAGT CACGTGTGGT GGCATTCGAG
GATTTAGGGA TGGAAGCCAT CTATGAATTC GAAGTGAAAG ACATGCCGGT TACTGTTGCA
GTAGACAGCA CTGGGGCCAA TGCCCATGAA ACTGGACCTG CCATTTGGAA GGTGAAGATT
CAAGAAGCAA ACGCCAAAGC CGAAGCTTGA
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| Protein sequence | MAVIRQQDFI DSIEDSLQFI SYYHPLDYIK AVEKAYNKEE SQAAKDAMAQ ILINSRMSAE
GKRPLCQDTG IVTCFVKIGM GVQWDKTDLT VQQMVDEGTR RAYNNKENPL RASIVSDPAG
ARKNTKDNTP AVVHIDTVPG EGIEVMIAAK GGGSENKSKM VMLNPNDSIA DWVVKTLPTM
GAGWCPPGML GIGIGGTAEK SAVLAKESLM DPVDIQELMD RGAQTTEEKL RLEIFKKVND
LGIGAQGLGG LTTVVDIKIK SLPTHAASLP VTMIPNCAAT RHAHFHLDGT GAAEFTPPDL
NDWPEVTWEV SKDTRRVNLD DVKKEDIQEW KVGETVLLSG KMLTGRDAAH KRIQTMLDNG
EGLPDGVDLT DRFIYYVGPV DAVGDEVVGP AGPTTATRMD KFTDLMLEQT GLIGMIGKAE
RGPATVSSIA KHKAVYLMAV GGAAYLVSKA IKKSRVVAFE DLGMEAIYEF EVKDMPVTVA
VDSTGANAHE TGPAIWKVKI QEANAKAEA
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