| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1620 |
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| Symbol | |
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| ID | 4174049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1926888 |
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| End bp | 1927607 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054630 |
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| Product | 3-oxoacid CoA-transferase, A subunit |
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| Protein accession | YP_661196 |
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| Protein GI | 109897941 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGTT TTGATAAAGT TGTAGCCAGC TACGCAGAAG CGATGGCAGG TTTAGAGGAC
AATATGACCG TCATTGCTGG CGGGTTTGGC TTATGCGGGA TCCCTGAAGG CCTAATTGGT
CAAATGAAAA AAATGGGTAC CAAAGGTCTT ACCATAGTGT CGAATAACTG TGGCGTTGAT
GGCTTTGGCC TAGGCCTTTT GTTAGAAGAC AAACAAGTCA AAAAGATGAT TTCGTCTTAC
GTGGGAGAAA ACGCCTTATT TGAACGCCAG TTGCTAGACG GCGAGCTTGA AGTCGAGCTC
ACTCCCCAAG GCACGCTGGC AGAGAAAATG CGCGCTGGCG GTGCCGGCAT TCCTGCTTTT
TATACGGCAA CCGGATACGG TACGCCTGTA GGTGAAGGTA AAGAAGTCAA AGAATTCAAC
GGCCGTCCTT ACATCATGGA AGAGTCTATC GTCGGTGACT TCGCCATTGT TAAAGCCTGG
AAAGCAGATC GTTATGGCAA CTGCATTTAT CGCCACACCG CACAAAATTT CAACCCTATG
GCAGCCACCG CGGGCAAAAT TACCGTATTA GAAGTGGAAG AATTAGTTGA GCCTGGCGAA
CTTGAGCCTA GCCAAATTCA AACTCCAGGC ATATATATTG ATCGCGTTAT TGTCGGGAAA
TTTGAGAAAC GCATTGAGCG CAAAGTTTTA GCAAAAACCA ATAACGAACT AGGGCAATAG
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| Protein sequence | MAGFDKVVAS YAEAMAGLED NMTVIAGGFG LCGIPEGLIG QMKKMGTKGL TIVSNNCGVD
GFGLGLLLED KQVKKMISSY VGENALFERQ LLDGELEVEL TPQGTLAEKM RAGGAGIPAF
YTATGYGTPV GEGKEVKEFN GRPYIMEESI VGDFAIVKAW KADRYGNCIY RHTAQNFNPM
AATAGKITVL EVEELVEPGE LEPSQIQTPG IYIDRVIVGK FEKRIERKVL AKTNNELGQ
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