| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1611 |
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| Symbol | |
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| ID | 4173865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1916792 |
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| End bp | 1917817 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054621 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_661187 |
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| Protein GI | 109897932 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.306933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATAGCA CCTTGAAAAA GTTACTCTCA CTTATTTTAC TATTGGCCGT TATTGCTGCT
GGCTATTTCG CTTGGCATTA CTTTAATTCT TCTGATGCAA TCGTTGGGTT TGCTTCAGGG
AATGGACGTG TTGAAGCCGT TCAAGTTGAT GTATCTACTA AGATTGCCGG GCGAGTAGAG
GCAATTTATG CTCAGGAAGG CGACTTAGTA CAGCAGGGGC AAACGATTGC AAAAATCGAT
ACCAAGCAGT TACACGCTCA GCTTCTGCGC TATGAGGCCG ACGTGGCCGC TGCACAAAGC
CAAGTGGCAT CAGCCAATGC TGGAATTGCC CAAGCCAAGG CAGAAAAGCG ACTAGCTGAA
CAAGAGCTAG CCAGAGCAAA GCAGCTTATT AAGCAAAATA ATATCAGTAG AGAAACCCTA
GATACCCGCG AAAGTAACGT GGCAGTAGCT ATTGCCAACG TTGAAGCCGC TGAAGCGTTA
AAAGTATCGC AATTGCGCAG CGTTGATGCA GCCAAAGCGG TAGTGGAAGA AATACAAACA
CAAATTGATG ATGCCACGCT TGTTTCCCCT ACCATTGGCC GGGTACTTTA TCGGTTAGCT
GAGCCTGGTG AAGTCCTTGG CAGCGGTGGT ACTGTGATAA CTTTGATTAA CCTTTCCGAT
GTATATATGG AGATATTTTT ACCTACAGCG CAAGCTCATC GTGTGGAAAT GGGGACCGAG
GCGCGCGTCA AATTGGATGT GCTTGATATC GCCATTCCTG CAACCGTGAG CTATGTATCG
CCAGAGTCTC AATTCACCCC TAAGCAAGTG GAAACGGTGA CTGAACGTGA AAAGCTGATG
TTTCGGATCA AAGTTCGCAT CCCACAAGCG CTTGTGCTGA AGCATATCGA AAAGGTAAAA
ACTGGGGTAA GGGGAGTGGC TTACATTCGA CTTAATACGC CGGACAATGA GCCTTTGGCT
GACTGGCCAG TGTTTTTACA GAAATTACCT AAAGAAACCG TATCTAACGA TAATAGCGCT
CGCTAA
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| Protein sequence | MDSTLKKLLS LILLLAVIAA GYFAWHYFNS SDAIVGFASG NGRVEAVQVD VSTKIAGRVE
AIYAQEGDLV QQGQTIAKID TKQLHAQLLR YEADVAAAQS QVASANAGIA QAKAEKRLAE
QELARAKQLI KQNNISRETL DTRESNVAVA IANVEAAEAL KVSQLRSVDA AKAVVEEIQT
QIDDATLVSP TIGRVLYRLA EPGEVLGSGG TVITLINLSD VYMEIFLPTA QAHRVEMGTE
ARVKLDVLDI AIPATVSYVS PESQFTPKQV ETVTEREKLM FRIKVRIPQA LVLKHIEKVK
TGVRGVAYIR LNTPDNEPLA DWPVFLQKLP KETVSNDNSA R
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