| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1604 |
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| Symbol | |
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| ID | 4173858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1909837 |
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| End bp | 1910628 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054614 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_661180 |
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| Protein GI | 109897925 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGAATAG CGTTAGGAGT TGAATACGAT GGTGCCCGCT TTCATGGCTG GCAAAGGCAA
AATGAAGTCA TAAGTGTACA GCAGCACTTA GAGGAAGCCT TGACGCGTAT TGCTAACGAA
CCTATCCGCG TTGTGTGTGC AGGTCGCACT GATGCGGGGG TGCATGCGAC AGGGCAGGTG
GTCCATTTCG AGACGACTAG CCAGCGCCCT GATAGAGCAT GGACACTGGG TATCAACACC
TACTTGCCAG ATACAATATC TGTGCGTTGG GTAAAAGCCG TGCCTGAGGA TTTTCACGCA
CGTTTTTCTG CTACTGCCAG GCGTTATCGC TATATCATCT ATAACAACAC GTTGCGCAGC
GGTATTTTGG CTAATGGCGT GACGCATATC TACGGTGATC TTGATCATGA GTTGATGCAC
GAAGCCGCAC AAAAATTAGT GGGTAAACAT GACTTTAGCT CGTTCAGAGC AGTGAACTGT
CAAGCGAAAA CAGCGACCCG CACCATGTCC CATATTCGCG TTAAGCGTAT GGGCGACTAT
ATTGTGATTG ATGTACAAGC CAATGCTTTT TTACATCATA TGGTGCGTAA CATTACGGGG
ACTTTGGTGG CTATTGGACA TAAAGAAAAG CCAGTGGAGT GGGTAGACGA ATTATTAGAG
GTCAAAGACA GAACGAAAGC GGGTATTACC GCGCTACCAA ACGGTTTGTA TTTAGTGCAC
GTTACGTATC CAGAAACGTT TGCACTGCCA AAACTGAAAA TGGGGCCTTT GTTCCTTGCG
GATGACTTCT AA
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| Protein sequence | MRIALGVEYD GARFHGWQRQ NEVISVQQHL EEALTRIANE PIRVVCAGRT DAGVHATGQV
VHFETTSQRP DRAWTLGINT YLPDTISVRW VKAVPEDFHA RFSATARRYR YIIYNNTLRS
GILANGVTHI YGDLDHELMH EAAQKLVGKH DFSSFRAVNC QAKTATRTMS HIRVKRMGDY
IVIDVQANAF LHHMVRNITG TLVAIGHKEK PVEWVDELLE VKDRTKAGIT ALPNGLYLVH
VTYPETFALP KLKMGPLFLA DDF
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