Gene Patl_1578 details

Gene Information

• Locus tag: Patl_1578
• Symbol: rimM
• ID: 4172571
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1884973
• End bp: 1885503
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638054588
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_661154
• Protein GI: 109897899
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.637772
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCACG CGTCTGACAC ATTAGTGATG GGCAAAATCG GCGCACCTTA TGGTGTTAAA 
GGTTGGGTCA AAATCACTTC ATATACCGAT GAATTAGACG GTATTTTTAG CTATACCCCT 
TGGCTTGTGG GCCAAGAAGG GAATACTAAA GAAATCGTCG TTGACCAATG GCGAACCCAC 
AATAAAGGAT TGGTTGCCAA ACTGGTTGGG GTTGAAACAA GAGACGATGC TGAAAGTATC 
AAAAATCTCG ACATTTCAAT TAAAGCTCAA CAGCTACCTC AGTTAGATGG TGATGAATTT 
TATTGGAGAG AGTTGGTCGG CATGCAAGTC GTAACCGAAC AGGGCTACAA CTTAGGTGTC 
GTGAAAGAAT TATTCGAAAC GGGTGCGAAT GACGTTATGT TAATCAAAGC CAATTTGAAA 
GATGCTTTCG GTCAAAAAGA ACGCATGGTC CCTTACTTAA TTGACCAAGT CGTTAAGAAA 
GTGGACCGTG AGGCGAAGAC CATACAGGTT GATTGGGATC CGAGCTTTTA A 

 

Protein sequence

MSHASDTLVM GKIGAPYGVK GWVKITSYTD ELDGIFSYTP WLVGQEGNTK EIVVDQWRTH 
NKGLVAKLVG VETRDDAESI KNLDISIKAQ QLPQLDGDEF YWRELVGMQV VTEQGYNLGV 
VKELFETGAN DVMLIKANLK DAFGQKERMV PYLIDQVVKK VDREAKTIQV DWDPSF