| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1570 |
|---|
| Symbol | |
|---|
| ID | 4172562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1876684 |
|---|
| End bp | 1877313 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638054579 |
|---|
| Product | ribosomal RNA methyltransferase RrmJ/FtsJ |
|---|
| Protein accession | YP_661146 |
|---|
| Protein GI | 109897891 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0293] 23S rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000414608 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAA ATAAGCAATC TGAAAGCAGT AAACGCTGGT TAAAAGAGCA CTTTGACGAT
AAATATGTCA TCAAAGCAAA AAAACAAGGT TTGCGCTCTC GAGCGGTGTT TAAACTTGAA
GAAATTCAAG CGAAAGACGG TCTGATTAAA CCCGGCATGA CGGTAGTTGA CTTAGGTGCT
GCTCCTGGTG GCTGGTCGCA ATATGCGGTC AAGCAAGTTG GCGATAACGG CCATGTTATC
GCGTGCGATA TTTTGTCGAT GGACCCGTTG CCTGGTGTTG ATTTCTTGAT GGGGGACTTC
CGTGAAGAAG CAGTGCTGGA TGCGTTATTG AACAAAATCG GTGGAAAAAA CGTAGATGTA
GTGATGTCCG ACATGGCGCC TAACATGACG GGCAATGATA CCGCAGATCA GGCGAAATCC
ATGTATCTAG TCGAACTGTC ACTGGATATG TGCCGTCAGG TTTTAAAGAA AAACGGGAGT
TACACCGTAA AAGTATTTAT GGGGGAAGGT TTTGACCAAT TTTTTAATGA AGTCAAAAAT
GCTTTCAAAG TAGTCAAAAC ACGTAAACCA GATTCATCTC GTGCGCGTTC CAGAGAGGTT
TATCTGGTAG CGACGGGCTT TAAATTATAG
|
|---|
| Protein sequence | MGKNKQSESS KRWLKEHFDD KYVIKAKKQG LRSRAVFKLE EIQAKDGLIK PGMTVVDLGA
APGGWSQYAV KQVGDNGHVI ACDILSMDPL PGVDFLMGDF REEAVLDALL NKIGGKNVDV
VMSDMAPNMT GNDTADQAKS MYLVELSLDM CRQVLKKNGS YTVKVFMGEG FDQFFNEVKN
AFKVVKTRKP DSSRARSREV YLVATGFKL
|
|---|
| |