| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1568 |
|---|
| Symbol | |
|---|
| ID | 4172560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1875674 |
|---|
| End bp | 1876168 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638054577 |
|---|
| Product | peptidylprolyl isomerase, FKBP-type |
|---|
| Protein accession | YP_661144 |
|---|
| Protein GI | 109897889 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00442405 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATCG AAAAAGACAC AGTTGTACAG TTTAAATATA CCATTACCGA ATTAGATGGT
ACTGAGCTTG AAAATAACCG TGATGCAGAG CCCGTAGCTT ACCTTCATGG GCACGACAAT
ATGATGCCGG GTGTTGAAGA CGCTCTAGAA GGAAAAAGTG TCGGCGATAG TTTTTCAGTG
GAGCTTGAAC CTGCGAAAAC CTATGGTGAA ATTCGTGATG ATGCGCAGCA ACGTATTCCA
ATGAAGCATC TGCAAGACGA TAAAGGGACG AAAAAGTGGA AAGCGGGTAT GACCGCGGTA
GTGAACACCG AGCAAGGTCA ACGTGAAGTG ACGGTACTCA AGGTCGGTAA ATTTATGGTG
ACCGTGGATT TGAATCATCC GATGGCGGGA AAAACACTAA ACTTTGCTTT AGAGGTAGTT
GATGTGCGCC AAGCGACACC TGAAGAAATT CAGCATGGGC ATGCTCATGG CGTTGGTGGT
CATCACCATG AATAG
|
|---|
| Protein sequence | MQIEKDTVVQ FKYTITELDG TELENNRDAE PVAYLHGHDN MMPGVEDALE GKSVGDSFSV
ELEPAKTYGE IRDDAQQRIP MKHLQDDKGT KKWKAGMTAV VNTEQGQREV TVLKVGKFMV
TVDLNHPMAG KTLNFALEVV DVRQATPEEI QHGHAHGVGG HHHE
|
|---|
| |