| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1540 |
|---|
| Symbol | |
|---|
| ID | 4172989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1847774 |
|---|
| End bp | 1848703 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054549 |
|---|
| Product | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase |
|---|
| Protein accession | YP_661116 |
|---|
| Protein GI | 109897861 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2890] Methylase of polypeptide chain release factors |
|---|
| TIGRFAM ID | [TIGR00536] HemK family putative methylases
[TIGR03533] protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACC GCGTGGATAC AGAACAAGCC GTGAATGATT TGCATACAAT GCTGGATATG
GTGCGTTGGT CGGTCAGTCA ATTTAATCAA GCCGGTTTGT TTTATGGCCA TGGTACTGAT
AACCCCTGGG ACGAAGCGGT GTGTTTAGTG CTACATACCT TAAATTTGCC TCAAGATATG
CTGGAGCAAA CAGGTGAACA GTTGTTTCAA GCTCGCCTAA CCCAGATTGA AAAACGTGAT
ATCGCCGCAC TGGTTCAGCG CCGCGCAGAA GAGCGGATAC CGTTACCGTA TTTAATGCAC
CAAGCGTGGT TCTGCGGCTT ACCATTTTAT GTTGATGAGC GCGTATTAAT ACCGCGTTCG
CCTATTGCTG AGCTGATTGA TGATAAATTT GCGAACTGGG TGTCAACACC CCCTACGCAT
ATTCTTGATC TATGTACCGG CGGTGGCTGC ATCGCTATCG CGTTGGCGTA CGCGTTTGAA
AGCGCAACGG TTGACGCGGT TGATATCAGT CCTGAAGCGC TTGAAGTGGC TGAAATGAAT
ATTCACGAGC ATCAATTGAG CGATAGAGTA TACCCTATTC AATCCGATTT AATGGCTGCG
CTAGAAGGGC AAAAATACGA CTTAATTATC AGCAATCCGC CCTATGTGGA CGCGGAAGAT
ATGGCTGACT TGCCCGAAGA ATTTCATCAT GAGCCAGAGC TTGCATTAGC GGCAGGCGAT
GATGGATTGG ACTTAGTGCA TAAGATGTTG CGCCAAGCAC CAGCGCATCT AACTGACGAT
GGTTGGTTGT TTGTTGAAGT GGGTAATAGC CAGTTCCATA TGGAGCATAT ATACCCTGAT
TTAGCGTTGC AATGGGTGGA GTTTAATCGA GGTGGTCATG GTGTGTTTGC AATCAGTAAA
AGCGATTTAG AGGCATATTT TGCCCGATAA
|
|---|
| Protein sequence | MNNRVDTEQA VNDLHTMLDM VRWSVSQFNQ AGLFYGHGTD NPWDEAVCLV LHTLNLPQDM
LEQTGEQLFQ ARLTQIEKRD IAALVQRRAE ERIPLPYLMH QAWFCGLPFY VDERVLIPRS
PIAELIDDKF ANWVSTPPTH ILDLCTGGGC IAIALAYAFE SATVDAVDIS PEALEVAEMN
IHEHQLSDRV YPIQSDLMAA LEGQKYDLII SNPPYVDAED MADLPEEFHH EPELALAAGD
DGLDLVHKML RQAPAHLTDD GWLFVEVGNS QFHMEHIYPD LALQWVEFNR GGHGVFAISK
SDLEAYFAR
|
|---|
| |