Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1528 |
Symbol | |
ID | 4172977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1834057 |
End bp | 1835508 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054537 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_661104 |
Protein GI | 109897849 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATATAT TCCGTAAAGT TTTCTTATCT TTTTTAGGCT TGACTGCCTT CACTCTTCTG ATCACCTTAG GACTTGCTCG TTGGAGCTTT GACCAAGGGT TTCTTGATTT TGTAGCAGGC CTAGAGCAGC AACGGCTGGG AGAACTGAGC GTAGCCCTTA GCGCAGCTTA CTCTCGTGAT AAAACATGGA GCACCGTGAT TGAATCCGGC TTGGAGTACT ATGCGAGTAC TCCTCCAATC CATTTTAGAG GTCGCCCACC CGCGTTGAAT CAACCCCGCC CCCTAAGGCA ACAAGGCAAA GGTCCGGGCT CTCCAGGCAA TCGGACTGCT CCTCCTCCCC CTAGGCGTAA CGGGCAAGAT GCGGCGCCGC CAACGGCTTT ATTTGACCCC CAAGGTAAAT GGTTAGTAGG GGCAAAACCT CATTCAGATA CAAACGATAT GGTCAGTTTC AGCATTTATT TACAAGATGA GAAAATCGGT GAATTACGTA GCTGGTTAGA CTCGGTGCCC CAGAGCGAGC TCGCCTCATC ATTTTCCATG CAGCAAAGGT ATGCGAGCAT TGCTATTGGT CTGTTATGCC TGCTTTTGGC AGGGATCGCA TCTTGGCTAC TGGCTAGAAA GCTCACTTCG CCAGTCAACG ACGTCATTCA CGGTGTTGAG CGTTTAAGTC GAGGTCACTA TGACTTATCG CTAAACCCGG TAAGAGCTGA TGAATTGGGT ATTCTCATGC GAAACCTAAA TGGCTTAAGC CATATATTAA ATGAAAACCG CAGTGCAAAG AATCGATGGT TTGCCGATAT ATCCCACGAA TTACGCACCC CCTTAACTAT TTTACTCGGC GAGTTAGATG CCTTGGAAGC AGGTATTCGA CCATTTGGGC CTGAGCAAAT TGAATCCTTA CAACAAGAAG CGTTGCTATT ACACCGTTTG GTGGACGATC TCTACCAACT CTCTATGTCT GATGTGGGCG GCTTGAAGTA CCACTTTAAC CAAATCGACA TCAGCAAAAT TTGTCATAAC GTGTGCAGTG CTCTAACAAG CAAAGCTCAG CAAAAAGGCT TACAGGTAAC GACTCAAATC CAAGATAAGG TCATCTGCCT AGCGGATCTT CAACGAATTG AGCAATTATT TATCAACCTG TTAAACAACG CCATTTTGTA CACTCAACAA GGCGGAAAAA TACAAGTGTC ACTGTCCCAT CATGCCCACT CGGCAGTCTT CGAAATCAAT GATACGTTAC CCGGTGTACC TGCTGAGGAT TGTGAAAAAT TATTCGACCC TTTATACCGC CAAAGCGCCT CACGAAATCG CTCTGCTGCA GGTGCCGGAT TAGGCCTAAC CATATGCAAA AATATCGTAA TTGCCCACAA AGGCAGCATT GTTGCCTCAC CATCAACCCT AGGGGGGTTA TGTGTGCGCG TGGAGCTTAC GTTAACTAAG GATAAAATAT GA
|
Protein sequence | MNIFRKVFLS FLGLTAFTLL ITLGLARWSF DQGFLDFVAG LEQQRLGELS VALSAAYSRD KTWSTVIESG LEYYASTPPI HFRGRPPALN QPRPLRQQGK GPGSPGNRTA PPPPRRNGQD AAPPTALFDP QGKWLVGAKP HSDTNDMVSF SIYLQDEKIG ELRSWLDSVP QSELASSFSM QQRYASIAIG LLCLLLAGIA SWLLARKLTS PVNDVIHGVE RLSRGHYDLS LNPVRADELG ILMRNLNGLS HILNENRSAK NRWFADISHE LRTPLTILLG ELDALEAGIR PFGPEQIESL QQEALLLHRL VDDLYQLSMS DVGGLKYHFN QIDISKICHN VCSALTSKAQ QKGLQVTTQI QDKVICLADL QRIEQLFINL LNNAILYTQQ GGKIQVSLSH HAHSAVFEIN DTLPGVPAED CEKLFDPLYR QSASRNRSAA GAGLGLTICK NIVIAHKGSI VASPSTLGGL CVRVELTLTK DKI
|
| |