Gene Patl_1528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1528 
Symbol 
ID4172977 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1834057 
End bp1835508 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content47% 
IMG OID638054537 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_661104 
Protein GI109897849 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATAT TCCGTAAAGT TTTCTTATCT TTTTTAGGCT TGACTGCCTT CACTCTTCTG 
ATCACCTTAG GACTTGCTCG TTGGAGCTTT GACCAAGGGT TTCTTGATTT TGTAGCAGGC
CTAGAGCAGC AACGGCTGGG AGAACTGAGC GTAGCCCTTA GCGCAGCTTA CTCTCGTGAT
AAAACATGGA GCACCGTGAT TGAATCCGGC TTGGAGTACT ATGCGAGTAC TCCTCCAATC
CATTTTAGAG GTCGCCCACC CGCGTTGAAT CAACCCCGCC CCCTAAGGCA ACAAGGCAAA
GGTCCGGGCT CTCCAGGCAA TCGGACTGCT CCTCCTCCCC CTAGGCGTAA CGGGCAAGAT
GCGGCGCCGC CAACGGCTTT ATTTGACCCC CAAGGTAAAT GGTTAGTAGG GGCAAAACCT
CATTCAGATA CAAACGATAT GGTCAGTTTC AGCATTTATT TACAAGATGA GAAAATCGGT
GAATTACGTA GCTGGTTAGA CTCGGTGCCC CAGAGCGAGC TCGCCTCATC ATTTTCCATG
CAGCAAAGGT ATGCGAGCAT TGCTATTGGT CTGTTATGCC TGCTTTTGGC AGGGATCGCA
TCTTGGCTAC TGGCTAGAAA GCTCACTTCG CCAGTCAACG ACGTCATTCA CGGTGTTGAG
CGTTTAAGTC GAGGTCACTA TGACTTATCG CTAAACCCGG TAAGAGCTGA TGAATTGGGT
ATTCTCATGC GAAACCTAAA TGGCTTAAGC CATATATTAA ATGAAAACCG CAGTGCAAAG
AATCGATGGT TTGCCGATAT ATCCCACGAA TTACGCACCC CCTTAACTAT TTTACTCGGC
GAGTTAGATG CCTTGGAAGC AGGTATTCGA CCATTTGGGC CTGAGCAAAT TGAATCCTTA
CAACAAGAAG CGTTGCTATT ACACCGTTTG GTGGACGATC TCTACCAACT CTCTATGTCT
GATGTGGGCG GCTTGAAGTA CCACTTTAAC CAAATCGACA TCAGCAAAAT TTGTCATAAC
GTGTGCAGTG CTCTAACAAG CAAAGCTCAG CAAAAAGGCT TACAGGTAAC GACTCAAATC
CAAGATAAGG TCATCTGCCT AGCGGATCTT CAACGAATTG AGCAATTATT TATCAACCTG
TTAAACAACG CCATTTTGTA CACTCAACAA GGCGGAAAAA TACAAGTGTC ACTGTCCCAT
CATGCCCACT CGGCAGTCTT CGAAATCAAT GATACGTTAC CCGGTGTACC TGCTGAGGAT
TGTGAAAAAT TATTCGACCC TTTATACCGC CAAAGCGCCT CACGAAATCG CTCTGCTGCA
GGTGCCGGAT TAGGCCTAAC CATATGCAAA AATATCGTAA TTGCCCACAA AGGCAGCATT
GTTGCCTCAC CATCAACCCT AGGGGGGTTA TGTGTGCGCG TGGAGCTTAC GTTAACTAAG
GATAAAATAT GA
 
Protein sequence
MNIFRKVFLS FLGLTAFTLL ITLGLARWSF DQGFLDFVAG LEQQRLGELS VALSAAYSRD 
KTWSTVIESG LEYYASTPPI HFRGRPPALN QPRPLRQQGK GPGSPGNRTA PPPPRRNGQD
AAPPTALFDP QGKWLVGAKP HSDTNDMVSF SIYLQDEKIG ELRSWLDSVP QSELASSFSM
QQRYASIAIG LLCLLLAGIA SWLLARKLTS PVNDVIHGVE RLSRGHYDLS LNPVRADELG
ILMRNLNGLS HILNENRSAK NRWFADISHE LRTPLTILLG ELDALEAGIR PFGPEQIESL
QQEALLLHRL VDDLYQLSMS DVGGLKYHFN QIDISKICHN VCSALTSKAQ QKGLQVTTQI
QDKVICLADL QRIEQLFINL LNNAILYTQQ GGKIQVSLSH HAHSAVFEIN DTLPGVPAED
CEKLFDPLYR QSASRNRSAA GAGLGLTICK NIVIAHKGSI VASPSTLGGL CVRVELTLTK
DKI