Gene Patl_1486 details

Gene Information

• Locus tag: Patl_1486
• ID: 4172212
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1785088
• End bp: 1787121
• Gene Length: 2034 bp
• Protein Length: 677 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638054496
• Product: TonB-dependent receptor, plug
• Protein accession: YP_661063
• Protein GI: 109897808
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4206] Outer membrane cobalamin receptor protein

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.243313
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTGTTCA ATACCAGTGC TCAGGCGCAG TTATTCAATG ACAACAAGCC CAATGTAAAA 
CATATTGAAA ATACACCGTT AGAGACAATG GTGGTAACGG GCACGCGCAC CGAGCTTGCC 
CAATCACAAA GCCCAATTCC TATTGAGGTG ATTACAGGAG CACAATTACA ACAAGTGAGT 
CATGGCACGT TAGCCAGTGC GCTCAACTTC ATTCCTGGAG TGGTCACTAA GCGTAACGAA 
AAAGACGGCT ACACAGTGCA AATGCAAGGT TTTGACGGAG ATCATGTATT GGTCCTGCTT 
GACAGCCAAC CGCTAATTTC ACCCACTGGC TCGTCGGTAG ATTTAGACCA AATCAGTGTG 
CTAAACATTG AGCGTATAGA AGTGTTACGC GGTGCGGCGT CTGTGCTTTA TGGTAGCTCT 
GCTATGGGCG GAGTGATCAA CGTTATCACC CGTAAACAGA ATCGAAATAG TGCCAAGTTC 
CGATACCAAG CAAGCAGTTA TATGCAAAAT GCCATCGATT CTGGTGATGT GGCTGGGTTA 
TACCAATTAA ACGTTAACCA AATGATTTTG GGCTGGCAGG GAAGTGTTAG CGCACAAAAA 
ATTGATGATC CAGGCTTTGA TTACGACCAA AATACACTCT CACAAAGTGC ACCCAGTACG 
GATAAGTCGT TTGTTAATCT GGGGTTGGCT AGGGACTTTG GTGAAGTTCA CTTGGCGTTA 
AAGACCCGCT ATTTCAGCGA TGAAAAAAGC AAATTGCGCT ATGCCATTCC TGGACAAGTT 
GGAGACATTA GTTATATATC CGACGTCGAG CAGTGGCAGC ACGATATCAG TGTGAGTCAA 
AGCCAAGTAT GGAAGGTACA AGGGCGCTAT CTACAACATG ATGAAACCAG CGGAGATTCA 
AACGGTCTGC GTGATGCCCA AATCACGTTG GCAGAAATAG ACAGTCAATA TCAGTGGCAA 
CTAAGCGATG TCGCCCTTGT ATCAGGCTTG GTATTGCATC GTGATGAACT TTATCAAGTT 
AAGCAAGCCA GCACGGCCGG TGTCGCTGGC ACTGTTGAAA TTGATGACCA AAGTCGTGAC 
AGTGTTGAGG CTTACACGCA AGCCAGTTGG CAATATGGCG ATCATGAATT GGTTGCGGGC 
CTTCGAGCAC AAAATGACAG TGACTTTGGG GTACATTCTG CGGCGCGGGT AAATGGTTTG 
TTTACCCTAA GCGATGATAA AAATGACTTA TGGCAATTGC GAGTTGGGGC AGGGCAAAGC 
TATCGCGTTC CTACGTTAAA AGAACGCTTT TATGTATTTG ATCACAGCAA CTTAGGTTAC 
ATGGTGCTGG GCAATGAAGA CCTTGACCCG GAAACCGCCC TAAGTGGCAA CTTTGAGCTG 
AGTTACCACG GCAGTGTTCA GCGCTTGTTT GGTGCTAATC GATCGCGCGA TGCCGCTGGC 
AATAACTCTC GCAGTGACTC AAACAAAAAC GCTCACAGCG CCTACCCGCG CTTGTCGCTA 
AGAGCCAATA TTCATTACGC CAAAGCGCAA GATTTTATTA ATACAGTGAC CGACGTTGAG 
GCTTCAGCGC AAACTGGTTT ATTGATTTCC CGCTACGCCA ATGTCGACCA AACCTATATG 
AAAGGGGCAG ATCTGTCGCT TAAGCTGGGT TGGCAAAAAG TGGATTATCA ACTGAGCTAC 
AGCTATCTAC ATGCCACCGA TGGCGATGGT GTTTACTTGG CTGAACGGCC CACGCATCAG 
ATTAAGACAA ACCTCACTTG GCGACTCCCT TACGATATCA ATGCGTTAGC CTACGTGGTG 
TATGAAACGG GCGAGCATCC AAGCAGCACA CAATTGGGTA TCGAAAAAGA CGATTGGCTC 
AGCGTTAATC TCAGCGTAAA TCAGCACATT AACGACCACT GGCAGTGGAA TGCCGGTATC 
GACAACCTCT TTGATGAACA TCAAAACAGC GATGCTATCG CCCAAGGCTT ACTCGATGTA 
AGGCCCCTTT CAAGCCAGCG GGTATTTGTC GGCGTTAGCT ATCAATTCTA TTAA 

 

Protein sequence

MLFNTSAQAQ LFNDNKPNVK HIENTPLETM VVTGTRTELA QSQSPIPIEV ITGAQLQQVS 
HGTLASALNF IPGVVTKRNE KDGYTVQMQG FDGDHVLVLL DSQPLISPTG SSVDLDQISV 
LNIERIEVLR GAASVLYGSS AMGGVINVIT RKQNRNSAKF RYQASSYMQN AIDSGDVAGL 
YQLNVNQMIL GWQGSVSAQK IDDPGFDYDQ NTLSQSAPST DKSFVNLGLA RDFGEVHLAL 
KTRYFSDEKS KLRYAIPGQV GDISYISDVE QWQHDISVSQ SQVWKVQGRY LQHDETSGDS 
NGLRDAQITL AEIDSQYQWQ LSDVALVSGL VLHRDELYQV KQASTAGVAG TVEIDDQSRD 
SVEAYTQASW QYGDHELVAG LRAQNDSDFG VHSAARVNGL FTLSDDKNDL WQLRVGAGQS 
YRVPTLKERF YVFDHSNLGY MVLGNEDLDP ETALSGNFEL SYHGSVQRLF GANRSRDAAG 
NNSRSDSNKN AHSAYPRLSL RANIHYAKAQ DFINTVTDVE ASAQTGLLIS RYANVDQTYM 
KGADLSLKLG WQKVDYQLSY SYLHATDGDG VYLAERPTHQ IKTNLTWRLP YDINALAYVV 
YETGEHPSST QLGIEKDDWL SVNLSVNQHI NDHWQWNAGI DNLFDEHQNS DAIAQGLLDV 
RPLSSQRVFV GVSYQFY