Gene Patl_1456 details

Gene Information

• Locus tag: Patl_1456
• ID: 4173613
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1750968
• End bp: 1752842
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638054466
• Product: ABC transporter related
• Protein accession: YP_661033
• Protein GI: 109897778
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components
• TIGRFAM ID: [TIGR02868] thiol reductant ABC exporter, CydC subunit

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATAATT TCATTCGTTT ATTACGCCTA TGTCGGCCCC ACGCAGGGGC GATGTTATTG 
GGTGTTTTTC TAACGGTATT GACCGTATTG GCCAACGTGG GATTGCTCGC TATTTCCGGC 
TGGTTTTTAG CGTCCATGGC GGCTGCTGGA TTAGCCGCAG CACAAATGAA TTATTTTACA 
CCCGCTGGCA TTATTCGCTT TTTAGCCATT GTGCGCACGG CATCTCGTTA TGGGGAGCGC 
CTTGTTACAC ATAACGCGAC CTTTCTACTG CTGAGTGAAA TTCGCGTCAG CGTGTTTGCC 
ACGCTAAGTC AGTTGAATAA TCAACAACTG GCCATGAATC GCAGTGCTGA TTTGTTTAAT 
CGTATGCAAA ACGATGTGGA TGCCCTCGAC AAATTTTATC TCAATGTGTT GCTGCCAATG 
CTGGTGGCAT TGGTATGCAT ACCGATTGTA ATTTGGATAA TCGCCGGTTT TAATCCACAA 
GTGGCGTTAG TCTGCTTAGG TGCACTGTTG TTAGTGGGGG TGGGGTTACC TGTGTTGCTC 
AGTGCCAAGC TTAGCCGCAC TGCAGCGCAG CAGACTGAGC GCTCAGCGCA GCTTCGTGAC 
GCCTTATCTG ATATGTTAAC AGGGCAACGG GAGTTGGCCT TATATCAAGC AACCGACAGC 
CAATTAGCAA AATGTAACGC AATACAGCAA AACTACAATG ATTTGCTGGA TAAGCGACAC 
GCGGCACTCG CTGACAGTGA TGGGGTGAGC TTAATCGTTG TGCAGCTAGC CATGCTTGCA 
AGTGTTTGCG TGCTGGTGCC TTTGGTCTTC TCACAGCAAA TAGAAAACGT GCATTTAGCT 
ATGCTGTCAT TATTTGTTTT AGCCAGTTTT GAAACTGTGC TGACTTTGCC AAATGCCTTT 
ATTCAACTCC CTGTAGCCTT AAGTGCCGCT GGGCGTATTT TTGCCTTGCA AGACGTGTTA 
GCCAAAACCC AAAATACATT GAATTCGAGT CCCAACACGA CAACTAGCAA AGGACAAGAT 
AAGCAACCTG AGCCGATACT GCAGCTAAAT CAACCGGTAC ATCAGGCCCC CAGCGTAACA 
AAAAGCCTCG GATTAAAACT GAAAAATGTC AGTTATCAGT ATGAGAGTGA TCCATTTACC 
GAGAACCTTT CCATTAAACC CTCGACGGGC AACCATCATT TTGCATTAGA GAATATTAGT 
CTGTCGATTA ACCCGGGCCA AAACGTGGCG CTTGTTGGCC CAAGCGGCAG CGGTAAGTCG 
ACTTTGGTCA ATTTGCTAAG TGGCTTATGG CCTGAGCAGC ACGGCAGTAT TTGTGTTACG 
CACGAGGCCA ACGAGCAAAT TGATAAAGAA TATGCCATTA AAGGGCTCAC CTTTGCGCTA 
CGCACCAAAC TCATCGCGAT CCTCGCCCAG CAACACCATA TTTTTGATGG CACCATCGCG 
GATAATTTGC GCTACGCCGC GCCTGATGCC ACCCACGAAC AAATGCTACA TGCCTGTGAG 
CAAGCTCAGT TGGGAGACTG GGTGTTCACT CTGCCAAATA AATTGAATAC GCGATTAGGC 
AGTGCAGGTA GACGAATTTC ACAAGGCCAA TCTCGCCGCT TAGCGATTGC ACAGTTGTTA 
TTGCGTCGCC CCGCATTATT GGTGTTAGAT GAACCCACAG AAGGCCTCGA TAACCAATCT 
AAGCAAGCCG TTATGAAAGC TATCATGGGG GCGATGAATG AGAGTACGGT GCTGTGTATC 
ACGCACGATC CAGCGCTGTT GTGCAATATG GACAAGATCA TATGGTTGGA AAATGGCCAG 
CTTAAAGGGG AGGGCACCCA CCAAGTGCTA TTGGCAGAGC ATCAGCAATA TAAAGAGTTA 
ATCACGCGCA TTTAG 

 

Protein sequence

MHNFIRLLRL CRPHAGAMLL GVFLTVLTVL ANVGLLAISG WFLASMAAAG LAAAQMNYFT 
PAGIIRFLAI VRTASRYGER LVTHNATFLL LSEIRVSVFA TLSQLNNQQL AMNRSADLFN 
RMQNDVDALD KFYLNVLLPM LVALVCIPIV IWIIAGFNPQ VALVCLGALL LVGVGLPVLL 
SAKLSRTAAQ QTERSAQLRD ALSDMLTGQR ELALYQATDS QLAKCNAIQQ NYNDLLDKRH 
AALADSDGVS LIVVQLAMLA SVCVLVPLVF SQQIENVHLA MLSLFVLASF ETVLTLPNAF 
IQLPVALSAA GRIFALQDVL AKTQNTLNSS PNTTTSKGQD KQPEPILQLN QPVHQAPSVT 
KSLGLKLKNV SYQYESDPFT ENLSIKPSTG NHHFALENIS LSINPGQNVA LVGPSGSGKS 
TLVNLLSGLW PEQHGSICVT HEANEQIDKE YAIKGLTFAL RTKLIAILAQ QHHIFDGTIA 
DNLRYAAPDA THEQMLHACE QAQLGDWVFT LPNKLNTRLG SAGRRISQGQ SRRLAIAQLL 
LRRPALLVLD EPTEGLDNQS KQAVMKAIMG AMNESTVLCI THDPALLCNM DKIIWLENGQ 
LKGEGTHQVL LAEHQQYKEL ITRI