| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1455 |
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| Symbol | |
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| ID | 4173612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1749224 |
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| End bp | 1750975 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054465 |
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| Product | ABC transporter related |
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| Protein accession | YP_661032 |
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| Protein GI | 109897777 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
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| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.490863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGTTGC GCGGTTTTTT AAAGCGCGAA TCTGCATCCG CAGCGGGCTT ACTTCGATTC
AGTATCGCCC TTGGTACTGT TAATGCCTTA CTGATGATAG CTAGTGCCTA CTTACTCGCA
CAAAGCATTC ACCTAGTAAT GTTTGAAGGG GCCGACTTAA ACGCCGTTAG CCATTTTCTT
TGGGCTTTAG GGGGATTGCT CCTTGTTCGA GGCTTGTTTT TGGCCCTAAG CCAACGTTTA
AGTGCTCGAG CTGCACGCAA TATTAAATCT GATATGCGCG CCAATCTTTT GAAAAAAATA
GCGCAACTCG GGCCAAATTT TACCGACCGA AAGGGCCACG GTGCGATGCT TAATACTCTA
CATGATGGGG TAGAAGCACT GCACGATTAC TACGCTAACT ATTTGCCTAG CGTGGCGTAT
AGCGCCCTGA TCCCTTTGGC TATTTTAGTG GTGATATTTC CCACCGACTG GCAAGCAGGG
TTAATATTTT TGTTTACCGC GCCGCTGATT CCTTTTTTCA TGATTTTGGT TGGGCATAAA
GCAGAGCAAC TTAATCAAGA CCGATGGCAG CAATTAGCGG TACTTGGAAA TTACTTTTTT
GACCGCATTC GCGGCCTAAC GCAATTGAAG CTGTTCGATG CGACCAAACG GGAATTAAAG
CAGATTGCTA AAATATCAGA TGATTTTCGC CATGCGACCT TAAGTGTATT GAAAATCGCC
TTTCTGTCTT CGTTTGCATT AGAATTTTTA GCCACGATCA GTGTGGCGCT GGTTGCGGTA
CTGATTGGCT TTCGTTTGTT TTTTGGCACG CTGGACTTCG CCACCGGCTT TGTGGTGTTG
TTACTCGCCC CTGAGTTCTA TTTACCTTTG CGTAAACTGG GGAACCATTA TCACGCTCGT
CTTGAAGGGA TAAGCGCCGC GGGCGATATG TTAGAAATAC TGCAAACCCC TAATAACGAA
TCGCAAGTGA CGAGTGAGCC TGCATCCAGT GCGCTAGATA ACAGCCTTAT TAACGGCTCT
ATTACTGTCT CTGGGCTGAG CTTTACTTAC CCTGACAGCG ATGAAGGGGT TCACGATATT
AGCTTGGCTT TACCGGCAAC AGGCATGGTG GCTTTTGTCG GAGCAAGTGG GGCTGGTAAA
AGCACGTTAT TTGACTGTTT GCTTGGCTTT TATCCTCAAA TCATCACTTG TATTGATGCA
GGCAATGGCC CACTTAGCGC TGCAGATATT CCTACGTGGC AACGGGAGAT CGCGTGGATC
CCTCAACAAC CGACATTATT CTACGCCAGC ATTAAAGAGA ACATCATGTT AGGTAAGCCT
GACGCAACAC AAGCAGAAGT TTCGTTGGCG GCTGAAAAAG CAGGCGCACT GGCATTCATC
GAATCCTTGC CGGATGGTTT CGACACCCTT TTAGGCGAAC AAGGTGAGGG GGTATCTGGT
GGGCAAAAAC AGCGTATCGC ACTGGCGCGG GCTTTTTTAA AAGACGCCCC CCTTTTAATA
CTTGACGAAC CTACCGCGCA TTTAGATAGC GCCACTGAGC GAGACGTACA GCGGGCCATC
AATGAGCACG CTAAAACACA TTTGGTATTG GTGATTGCTC ATCGACTAAG TACCTTACAA
CAAGCAGAAT CAATTTTGTT GCTTGAAGCT GGGCGCGTAG TGCAACAAGG CAATTATCAG
ACATTGAGCC AGCAGAATGG GCCGTTTAAG CAATTGCTAA ATAGCGATAA TCAGGCAGGT
GCTTATGCAT AA
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| Protein sequence | MLLRGFLKRE SASAAGLLRF SIALGTVNAL LMIASAYLLA QSIHLVMFEG ADLNAVSHFL
WALGGLLLVR GLFLALSQRL SARAARNIKS DMRANLLKKI AQLGPNFTDR KGHGAMLNTL
HDGVEALHDY YANYLPSVAY SALIPLAILV VIFPTDWQAG LIFLFTAPLI PFFMILVGHK
AEQLNQDRWQ QLAVLGNYFF DRIRGLTQLK LFDATKRELK QIAKISDDFR HATLSVLKIA
FLSSFALEFL ATISVALVAV LIGFRLFFGT LDFATGFVVL LLAPEFYLPL RKLGNHYHAR
LEGISAAGDM LEILQTPNNE SQVTSEPASS ALDNSLINGS ITVSGLSFTY PDSDEGVHDI
SLALPATGMV AFVGASGAGK STLFDCLLGF YPQIITCIDA GNGPLSAADI PTWQREIAWI
PQQPTLFYAS IKENIMLGKP DATQAEVSLA AEKAGALAFI ESLPDGFDTL LGEQGEGVSG
GQKQRIALAR AFLKDAPLLI LDEPTAHLDS ATERDVQRAI NEHAKTHLVL VIAHRLSTLQ
QAESILLLEA GRVVQQGNYQ TLSQQNGPFK QLLNSDNQAG AYA
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