| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1423 |
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| Symbol | |
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| ID | 4173563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1708330 |
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| End bp | 1709511 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054433 |
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| Product | major facilitator transporter |
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| Protein accession | YP_661000 |
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| Protein GI | 109897745 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.775397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCCC CCCATACTGC CGCGTTTTGG CGCGCCACCC TAGCACTGTG TTTAGGCTCC
TTCATGGTGT TTGCTAACTT GTATGTTACC CAGCCATTAT TGCCTATGAT AGCTGAGCAG
TTTGGGGTGT CCGCGCTGCA ATCAAGTGTC AGTTTTACTA TTACTACCTT TACTCTGGGG
ATCTCTCTAT TATTTTATGG GCCGCTCTCT GATGCCGTTG GGCGCAAAGG GATCATGTTG
TTCACCATGG TGGGTATTAC GGTTACTACT ACTTGCTTGG CATTCGCTGG TGATTATTAC
AATTTGCTGA TTTTACGTGC CGCGCAGGGT TTCTTTTTAG CAGGTTTACC CGCTATCGCG
GTGGCCTACA TGAGTGATGA ATTTAACGCT GATGCTTTGA TGATAGCCGT AGGTATCTAT
ATCAGTGGTA ATTCACTCGG TGGCATCGGT GGGCGCTTAC TCGGGGGATT TTTAGGGGAA
AACTTTGGTT TAACGGGCAC ATTTGAAATA ATGGCATTAT TAAGTTTGAG CCTGACATTG
GTGTTTGCTT GGCTTTTACC GCCCTCAAAA CGCTTTACTG CTAAAGCGCT GCGGCCTATA
CCCATGCTAA ATCAGCTGGG AGCACATCTT GCCAACAAAC GCTTACTGTT GAGTTACCTG
ATTGGCGGGC TAAGCTTTTT TGTCTTTGTG AACCAATATA GCTTTGTTAC GTTTGTGCTC
AAAGACAGCC CGTATGCTTT ATCGGCGCAG TATATTGGAT TGCTATTTTT AACTTATTTA
TCTGGCACTT ACGCATCGGC TATTTCAGGT AAGTTGGGCA AGCGTTATTC GCAACCTGTA
TGCATGATGG CGGGTACAGT GATAATTATG CTGGGTTCAG CCGTGACGTT AATTCCGTCT
TTGTATGCGA TTATTCTAGG GTTACTGATT AATGCCTTTG GTTTCTTTTT AACGCATTCC
ACTGCAAGCA GTTGGGTAAG CTTAAATGCT AAAACGGGCA AAGCTAGTGC GTCTTCTTTG
TATCTGACTT TTTATTATCT TGGTGCCAGT TCTGGAGGCA TCTATTTAAA CCTATTCTGG
CAAGGCGGCC ATTGGGGTGG TGTTGTGTTA GGGTCTTGGT TAATGCTGTT GGTTATATTG
GCACTCGGTT ACAAATTAAG ACGTCTACAT GGTATTTCAT AG
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| Protein sequence | MIAPHTAAFW RATLALCLGS FMVFANLYVT QPLLPMIAEQ FGVSALQSSV SFTITTFTLG
ISLLFYGPLS DAVGRKGIML FTMVGITVTT TCLAFAGDYY NLLILRAAQG FFLAGLPAIA
VAYMSDEFNA DALMIAVGIY ISGNSLGGIG GRLLGGFLGE NFGLTGTFEI MALLSLSLTL
VFAWLLPPSK RFTAKALRPI PMLNQLGAHL ANKRLLLSYL IGGLSFFVFV NQYSFVTFVL
KDSPYALSAQ YIGLLFLTYL SGTYASAISG KLGKRYSQPV CMMAGTVIIM LGSAVTLIPS
LYAIILGLLI NAFGFFLTHS TASSWVSLNA KTGKASASSL YLTFYYLGAS SGGIYLNLFW
QGGHWGGVVL GSWLMLLVIL ALGYKLRRLH GIS
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