Gene Patl_1418 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1418 
Symbol 
ID4173558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp1701243 
End bp1701911 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content48% 
IMG OID638054428 
ProductGntR family transcriptional regulator 
Protein accessionYP_660995 
Protein GI109897740 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAACC TAACCGAACA ACCTATTACT GCTGCTGATA AAACCTTTTT CCAGTTGCGT 
AAAGACATCG TTGAAGGTGT GGTGCTGGCG GGTTCAAAGC TTAGTGAAAC GGAGTTGTCG 
ACAAAGTACG GCGTGAGCCG CGCCGTTATC CGAGAAGCGA TAAACCGCTT AGAGGCGTGT 
CATATTGTCG AGCGCAAAGC CAATGTGGGG GCGCGGGTAG TGTCTTTGTC TCCCGAAGGG 
CTGGTGGACT TGTATCAAGT ACGTGAGTCC CTTGAAGGCA TGGCCGCGCG TTTAGCGGCA 
CAAAATATGA CCAATGACGA AATCGCCGAC TTAAATGCTT TACTTAATGT GCACTCCCAA 
GACGTAAAAA ATCACGGCTC TTATTATCAA GAGGCAGGGG ACGTGGACTT TCACTACCGA 
ATCATTTTAG GCAGTAAAAA CAACCACCTT ATCACCATGC TAGTCAACGG TATTTATCAT 
TTGGTGCGCA TGTATCGCGT GCAGTTGGGC ATGTCTGGCC CTCGCGTAAG CACAGCGTTT 
GATGAGCATA AACATATTGT ACAAGCGATC TCGAATCGGG ACGGCGAGTT AGCAGAGATG 
CTGATGCGCC GCCATATTTT ATATTCGAAA AATAATATTC AGCGCAAATT AGCGCCACAG 
CCGGTCTAG
 
Protein sequence
MQNLTEQPIT AADKTFFQLR KDIVEGVVLA GSKLSETELS TKYGVSRAVI REAINRLEAC 
HIVERKANVG ARVVSLSPEG LVDLYQVRES LEGMAARLAA QNMTNDEIAD LNALLNVHSQ 
DVKNHGSYYQ EAGDVDFHYR IILGSKNNHL ITMLVNGIYH LVRMYRVQLG MSGPRVSTAF 
DEHKHIVQAI SNRDGELAEM LMRRHILYSK NNIQRKLAPQ PV