| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1406 |
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| Symbol | |
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| ID | 4173546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1690452 |
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| End bp | 1691222 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638054418 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_660985 |
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| Protein GI | 109897730 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAATT TTTTTTCAGT GGCTGGCAAG ATTGCGGTCG TAACAGGTGG CTCTAGTGGA
ATAGGCGCTA TGATCGCCCG TGGATTCGTG GAAAACGGCG TGAAAACCTA TATCACTTCG
CGCAAACTTG AACAGCTTGA ACAGACCGCT TCTGAACTAT CCTCCTTAGG TGAATGTATT
GCCATTCAGT CTGACTTATC GACCATGGCA GGAGTTGAGG CATTCGCCGA GGAAATGCTT
AAACGCGAAT CAAAAATAGA CATCCTCATC AACAATGCAG GTGCCGCCTG GGGAGCGCCG
GTAGAAGACT TCCCTGAATC AGGTTGGGAT AAAGTCATGG ATTTAAACGT GAAGTCTATT
TTCTTTTTGA GCCAACGCTT ACTGCCCTCG CTTCGTTTAG CGGGCGACGC GAACGAGCCT
TCACGGATAG TCAACATTGC CTCTGTTAAC GGGCTCACTC ACCCTCACAT GAACAATTAT
TCGTATTCTG CGAGTAAGGC AGCGGTTATT CAATTGACGC GCCATATGGC GGCCGATATT
CGCCCAACTA ACGTCAATAT TAATGGGATT GCGCCCGGGT TTTTCCCAAG CAAGATGACA
AAACAATTAC AGGGGCATGA GCAAGAGATT GCAGATAGCC TTCCTGCGCG CAAAGTGGGC
GAGTTGGCTG ATGTGGCTGG TACGGCAATT TACCTTTGCT CAAGGGCGAG TAATTACGTA
TGTGGTCACA CGGTTGTGTT AGACGGTGGT CAAGTGGCTA ATGCGGGTTA A
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| Protein sequence | MNNFFSVAGK IAVVTGGSSG IGAMIARGFV ENGVKTYITS RKLEQLEQTA SELSSLGECI
AIQSDLSTMA GVEAFAEEML KRESKIDILI NNAGAAWGAP VEDFPESGWD KVMDLNVKSI
FFLSQRLLPS LRLAGDANEP SRIVNIASVN GLTHPHMNNY SYSASKAAVI QLTRHMAADI
RPTNVNINGI APGFFPSKMT KQLQGHEQEI ADSLPARKVG ELADVAGTAI YLCSRASNYV
CGHTVVLDGG QVANAG
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