Gene Patl_1384 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1384 
Symbol 
ID4171881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp1668337 
End bp1668978 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content43% 
IMG OID638054396 
Producttransposase IS116/IS110/IS902 
Protein accessionYP_660963 
Protein GI109897708 
COG category[L] Replication, recombination and repair 
COG ID[COG3547] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.967641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATTGCTC ATTATGGTGA GGCTATTCAG CCTAAGTTAT CTCAACTAAA ACCAGATACC 
ATGCAGGCTA TGAGTGATTT AGTCGCAAGG CGAAATCAAT TGCTCGTCAT GCAAACAATG 
GAAAAGAACC GCCTGCAAAT TCTACCAAAA GAACTCGCCA TGACCATCAA ACCTATTCTC 
ACTGCCTTTA AAAATCAGAT AACCAAAATC GAGAATAAAA TTGTCGCGCT CATTGAATCT 
TGTCCTGATT ATCAAGCGAA GAATTGCATC TTACAGAGCA TGAAAGGAAT AGGAAAAATA 
GCCTCCGCTT CCATCATCAG TAACCTGCCA GAGTTAGGTT ACATGACTAA CAAACAAGCC 
TCTGCGTTAG TCGGTGTGGC TCCCATGAAT CGAGAAAGTG GGCGCTATAA AGGGTTGCGG 
AAAATCCAAG GTGGCAGACA TCAAGTCAGA ACCGTTTTGT ACATGGCGAT GATGTCAGCG 
ATACAAAGTA ACCCCGTATT TAAGGAAACA TATCAACGAT TAGTCGCAGC AGGAAAGCCT 
AAGAAAGTGG CTATTATTGC GTGCATTAGA AAGATGGTTG TTACCTTAAA TTCAATGCTC 
AGAGACGGGG TCATGTGGGA AGCGCCAAAG GCTACAAATT AG
 
Protein sequence
MIAHYGEAIQ PKLSQLKPDT MQAMSDLVAR RNQLLVMQTM EKNRLQILPK ELAMTIKPIL 
TAFKNQITKI ENKIVALIES CPDYQAKNCI LQSMKGIGKI ASASIISNLP ELGYMTNKQA 
SALVGVAPMN RESGRYKGLR KIQGGRHQVR TVLYMAMMSA IQSNPVFKET YQRLVAAGKP 
KKVAIIACIR KMVVTLNSML RDGVMWEAPK ATN