| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1361 |
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| Symbol | lysS |
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| ID | 4171858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1636610 |
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| End bp | 1638163 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054374 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_660941 |
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| Protein GI | 109897686 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.807821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAC AGCAACAAGA TGAAAACAAG CTCATAGCTG AGCGCCGGGC TAAACTTTCA
CAGATCCGTG AAAATTGTAA ATCGAACGGC TTCCCTAATA CCTTCCGCCG TGAATTTTAC
AGCGAAGATC TTCAAGCTGA ATTTGGTGAG CACGAGAAGG CAGCCCTAGA AGAACTCGGT
AAAGTGGTCA GCATTGCTGG GCGTATTCTT GCTAAACGTG GTCCATTTCT GTTGTTACAA
GACATGACGG GTCGTATTCA AGCGTACGCC TCAAAAGACA CGCAAAAAGA CATTAAAGCA
CGTTACACCA GTTTAGATAT TGGTGACATC ATTGGTGTTA AAGGTGAGCT ACACAAGTCG
GGTAAAGGCG ACTTGTACGT CAACATGAAC GAATATCAAT TGTTGACGAA GTCACTGCGT
CCGTTGCCTG AAAAGTTCCA TGGCCTTGCT GACCAAGAAA CAAAGTATCG CCAGCGTTAT
GTTGATTTGA TCACTAATCA ACAAACCCGC GAGACCTTTA TGATCCGTAG CAAAATTGTC
ACCGGTATTC GCAATTTCCT AAGTGAGCGT AAGTTCATGG AAGTCGAAAC GCCTATGCTA
CAAGTGATCC CAGGTGGCGC CACGGCAAAA CCGTTCAACA CGCATCACAA TGCTTTAGAC
ATTGACATGT ACTTGCGTAT CGCCCCTGAG CTTTACTTAA AGCGCTTAGT GGTAGGTGGG
TTTGAGCGTG TGTTTGAAAT AAACCGTAAC TTCCGTAACG AAGGCTTATC AACACGTCAT
AACCCTGAGT TCACTATGCT TGAGTTCTAC CAAGCTTATG CTGACTATCA AGACTTGATG
AACCTCACAG AAGAAATGCT GCGTACCGTT GCACAAGATG TATTAGGTAC CGCCATCGTT
AAGAACACCA TCAAAGATAC TGAAGGTAAC GTAGTCGAAG AGAAAACTTA TGACTTTGGC
CAGCCTTTCC AACGTTTAAC CATGAGTGAA GCGGTCATTA AATACTGGCC TGAAGCAAAT
GTAGCTGCTA TCAACGATCC TGAAGCGCAC CTCGATGAGC TAAAAGCCAT GGCGAAACAG
CTGCACATTA AAGAGCCAGA AGTGGATGGC ATTTGGGGTG CTGGTAAGTA CTTATGTGAA
ATTTTTGAAG CAACCGCAGA AGAACAACTT GATCAGCCTA CTTTCATTAC TGCTTATCCT
TGGGAAGTGT CGCCTTTAGC GCGTCGTAAC GATGACAATC ATTTCGTAAC TGACCGTTTT
GAGTTCTTCG TAGGCGGCCG TGAATTAGCC AATGGTTTCT CTGAGTTGAA TGACTCTGAA
GATCAAGAAG CGCGTTTCCG TAAACAAGTA GCTGAGAAAG ATGCAGGCGA TGATGAAGCC
ATGCACTTCG ATGACGACTA TATTCGTGCT CTTGAATATG GTTTACCGCC AACAGCGGGC
GAGGGCATTG GTATCGACCG TTTGGTGATG TTATTCACTG ACAGCCCGAC GATTAAAGAC
GTGATCTTGT TTCCGCACAT GAAACCAGAA GTCAGTGGCG ACAAGGCTGA ATAA
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| Protein sequence | MTEQQQDENK LIAERRAKLS QIRENCKSNG FPNTFRREFY SEDLQAEFGE HEKAALEELG
KVVSIAGRIL AKRGPFLLLQ DMTGRIQAYA SKDTQKDIKA RYTSLDIGDI IGVKGELHKS
GKGDLYVNMN EYQLLTKSLR PLPEKFHGLA DQETKYRQRY VDLITNQQTR ETFMIRSKIV
TGIRNFLSER KFMEVETPML QVIPGGATAK PFNTHHNALD IDMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSTRH NPEFTMLEFY QAYADYQDLM NLTEEMLRTV AQDVLGTAIV
KNTIKDTEGN VVEEKTYDFG QPFQRLTMSE AVIKYWPEAN VAAINDPEAH LDELKAMAKQ
LHIKEPEVDG IWGAGKYLCE IFEATAEEQL DQPTFITAYP WEVSPLARRN DDNHFVTDRF
EFFVGGRELA NGFSELNDSE DQEARFRKQV AEKDAGDDEA MHFDDDYIRA LEYGLPPTAG
EGIGIDRLVM LFTDSPTIKD VILFPHMKPE VSGDKAE
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