Gene Patl_1347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1347 
Symbol 
ID4172817 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1622442 
End bp1623281 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content43% 
IMG OID638054359 
Productaminoglycoside phosphotransferase 
Protein accessionYP_660927 
Protein GI109897672 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0510] Predicted choline kinase involved in LPS biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.743543 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCATC GGCATCAGCT TAACTCAGCT GTATTGGCTG AGCTAACAAG TCTAGCGCTC 
TGCCGAGATG GATTTAGCGT AAAGCCAGTT CAAAAGGCCG GGGCGGTTAA TACAAGTTAT
TGTTTAACCA CTCCTTCTGG TCGATTTTTT ATGAAAATGT TCGAATCTGA TCAGGTAAAT
CAACTTGATC GTCAACAGCT ATTCGATATT CAAAAAGCGG TCTGGCAGAA AGGGATGGCC
TGTGAGCCGG TCTACCTGTC AACGGCCGCT GGTTTTCAAT TAGATGCTTG GGTACAAAGT
CATACTTTGG AAAACAGCAC TCTGAGCGAA GACATTAAAG CGTGTCAGTT GGCTGATGCA
TTGCATCGCA TTCATAGCTT AGATATTGAA GGGCATAGAC TGAATTTACC TGCACAGTGG
GCAGGCTATC TATCACAATT GCCGCAGCAA CAATATTGGA AAGAGCACGA GGAAGCGCAG
GGGTTAGCGA GCATTTGGTC TGCTACACCG CCCCATGATT TAGTTTTTTG CCATAATGAT
TTGTCGTTTC AGCATGTCAC AACAGAACAA TCTAACCTGA TATTCGATTG GGAATATTGC
GCGTTATCAA ATCGTTACTT TGACTTAGCG GCTTGCATCG AAGTCAATAA TCTCAATTTT
GAGGTTCAAA CTTATTTGCT ATCAAGATAT GCACAAAATA CGCAGTTACC ACTGCCGTTA
GTATTACAAA AGACCACTGA AATGCTTCCG TTAGTTAATC TAACTAGTCG CCTTTGGTAC
GCTGTAGCAA AGAAAATAAC CGCTTCACAA TGTCATACTG CCGATAAAAT AAGCGGTTGA
 
Protein sequence
MPHRHQLNSA VLAELTSLAL CRDGFSVKPV QKAGAVNTSY CLTTPSGRFF MKMFESDQVN 
QLDRQQLFDI QKAVWQKGMA CEPVYLSTAA GFQLDAWVQS HTLENSTLSE DIKACQLADA
LHRIHSLDIE GHRLNLPAQW AGYLSQLPQQ QYWKEHEEAQ GLASIWSATP PHDLVFCHND
LSFQHVTTEQ SNLIFDWEYC ALSNRYFDLA ACIEVNNLNF EVQTYLLSRY AQNTQLPLPL
VLQKTTEMLP LVNLTSRLWY AVAKKITASQ CHTADKISG