| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1344 |
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| Symbol | |
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| ID | 4172814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1619481 |
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| End bp | 1621544 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054356 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660924 |
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| Protein GI | 109897669 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0341297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTTT GTTCTACCTT ACTTGCTCTA TCCATAGCAT CAAGTTTCGC CAGCCACGCT
GATGAGTCCA AAGACATTGA ACGTATTACT GTTAGCTCAG ATTTTCGCCA GCAAGCGTTA
ATGTTCATCC CTGCAAGCGC AACCATATTA AGCGATTCAC AAATTGAAGC TCGCCAAGCG
CAACACCTTG AAGATATTTT AAATGTTGGC GCCAATATCA ACTTTGCCAG TGGTGCATCT
CGCGGGCGAT TCATTCAAAT TCGCGGTATC GGTGAGCGCA GCCAATTTTC AGAGCCAAGT
AACCCATCTG TTGGATTTCT AGTGGATGAC TTTGACTTCT CTGGTATTGC AGGTGTGGGC
ACCTTGTTTG ATGTGGAACA AGTTGAAATT TTGCGCGGCC CACAAGCGAC CGAGTTTGGG
GCAAGTGCCA TGGCCGGGGT TATTAAGGTT AAAACCGTTG ATGCCGGACC GGATCAAAGC
GGTAAATTAT CATTTTCACT TGCCGAGCAA AATACATGGA GTGTAGGCGG CGCTTACGGC
AATGCCATAA CGGATAATCT ATTCTATCGT GTGGCGGTTC AACAGTTTAA GAGTGATGGT
TTTGTACAGA ATACTTTTTT AAATCGTGAC GACACCGATA ACCTAGATGA ATTTACCTCA
AGAGTAAAAC TGAAATATCT GCCTGCAGAT TGGTTGACCT TCGACCTTAA TTATCAATAT
TTCGATATAG ATAACGGTTA TGACGCGTTT TCTCTGGAAA ATACTCGAGA ATCACGTGCT
GATGAACCGG GTTTCGACCG CCAAAAAACT CATGCCCTAG GCCTAAAAAC GGAAATAAAC
ACCGAGCTTA CGGATGTTTT TGTTATTTTG AGTCAATCAG ATTCAGATAT GGGCTACAGC
TACGATGAAG ATTGGACATA CGTCGGCTTT CATCCTGACG AGTATTCTTC CGTAGACAGC
TATTTCAGAG AGCGCGATAC AGATAACGTT GACATACGCT TTTTATCAAA CGACAACTCA
ACTTTATTCA ATGGCTCAAC TCAATGGTTA TTTGGCCTGT ATTCGAAATC CATGGATGAG
AGTTTACTGC GCCAATACAC CTATGCAGAC GGTGACTTTA CAAGTCGTTA TCAACAAGAC
AACCTCGCCG TATATTCGCA AGTCGATACC GAACTGTCTG ACACCCTTAG TTTACGCTTG
GGCCTTCGCG CCGATCGTTT TGAAATAGAC TACAGCGATA TAAGCGGTTT CACCCAAAGC
AATGATAAAA CGTTGATCGG CGGTAAAGCC GTGCTTGATT ATAGTATCGA TAGCGCCTCT
GTTTATGCCA GCGTATCAAG GGGCTACAAA GCCGCTGGCT TTAATCCAGA TGAGCGGGTC
AGCTCGGACA AGCGTATTTA TCAACCTGAG TACAATTGGA ACTACGAAAT TGGGGTAAAG
GGCAACTTTA TCAATTACGA CGCCTTTATT CGCATGGCAG TTTTCTACAT GGACCGTGAA
GACACCCAAG TCAGTGATTA TGATGTACAA ACTCGTGAAG ACGGTAGCGC CACATTCATT
GACATCATAG GTAATGCTGA TACAGGCACT AACTGGGGTT ATGAATTAGA GTCAGGCTGG
CAAGTAAACG ACAGTGTATA TTTGCACGCT AATTTCGGTT GGCTTGATGC CACTTTTGAA
GATTATACCC TAGCCGATGG CTCGGTTGTT GATAAGCAAG ACCAAGCCCA AGCACCAAAC
TACACCTTCA ATATTGGCGC CAATGTGCAG TTGTCTGAGC AAGTCAGTTG GACGATAGAC
GCAGATGGTA AGGACGAATA CCGCTTTTCT GACGGTCACG ACGAAAAGTC ACCATCTTAT
GTGTTGGTCA ATACCGCGAT GCGTTTTGAT GTACAAGACT GGTCGTGTTC TGTGTGGGTA
AAAAATGTGT TTGACCGAAC TTACTACGTC CGTGGTTTTG GTGGATTCAA CAATGACCCA
CGAGAAGGTT ACGCCACTCC GGAGCCTTAT TATCAACTGG GAGATGGCCG TCAAGTGGGC
ATCAGTGCTC AATACAACTT TTAG
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| Protein sequence | MKFCSTLLAL SIASSFASHA DESKDIERIT VSSDFRQQAL MFIPASATIL SDSQIEARQA
QHLEDILNVG ANINFASGAS RGRFIQIRGI GERSQFSEPS NPSVGFLVDD FDFSGIAGVG
TLFDVEQVEI LRGPQATEFG ASAMAGVIKV KTVDAGPDQS GKLSFSLAEQ NTWSVGGAYG
NAITDNLFYR VAVQQFKSDG FVQNTFLNRD DTDNLDEFTS RVKLKYLPAD WLTFDLNYQY
FDIDNGYDAF SLENTRESRA DEPGFDRQKT HALGLKTEIN TELTDVFVIL SQSDSDMGYS
YDEDWTYVGF HPDEYSSVDS YFRERDTDNV DIRFLSNDNS TLFNGSTQWL FGLYSKSMDE
SLLRQYTYAD GDFTSRYQQD NLAVYSQVDT ELSDTLSLRL GLRADRFEID YSDISGFTQS
NDKTLIGGKA VLDYSIDSAS VYASVSRGYK AAGFNPDERV SSDKRIYQPE YNWNYEIGVK
GNFINYDAFI RMAVFYMDRE DTQVSDYDVQ TREDGSATFI DIIGNADTGT NWGYELESGW
QVNDSVYLHA NFGWLDATFE DYTLADGSVV DKQDQAQAPN YTFNIGANVQ LSEQVSWTID
ADGKDEYRFS DGHDEKSPSY VLVNTAMRFD VQDWSCSVWV KNVFDRTYYV RGFGGFNNDP
REGYATPEPY YQLGDGRQVG ISAQYNF
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