Gene Patl_1319 details

Gene Information

• Locus tag: Patl_1319
• ID: 4173367
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 1585355
• End bp: 1587220
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638054326
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_660899
• Protein GI: 109897644
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCTGG ATTTAGCCCA CTACCCGCTT CTGGCTTTAG CGGACACGCC CGAGCAATTG 
CGCGAGCTTC CTCAAGACAA ACTAAAGCAA GTCGCCAAAG AATTACGTCA ATATTTGTTA 
ACCAGCGTAA GCCAAAGTAG TGGTCATTTT GCCTCTGGGT TGGGCACAGT CGAATTAACC 
GTCGCCCTGC ATTATGTTTA CAACACCCCG TTCGACCGCC TTATCTGGGA TGTGGGCCAT 
CAAGCTTATC CCCATAAGAT TTTGACAGGC CGTCGTGATC GTATGCCTAC CATTCGCCAA 
AAGAACGGTT TGCACCCTTT CCCTTGGCCG AATGAAAGTG AGTACGATAC CTTTGCCGTA 
GGTCACTCAT CTACCTCCAT CAGCGCTGCA GTAGGTATGG CCGTTGCTGC AGAAAAAGAA 
GCATTGGGTA GAAAGGTCGT TGCCGTTATC GGTGATGGCG CAATGACCGC AGGTATGGCA 
TTTGAAGCGC TAAATCATGG CGGTGACATC GATAAAGACA TGCTGGTTAT TTTAAATGAT 
AACGAGATGT CAATTTCAGA GAATGTGGGG GCATTAAACA GTCACCTAGC CCGTTTACTT 
ACAGGTAACT TCTTTAACTC TATTCGTGAC GGCGGCAAGA AACTCCTCAG CAGCGTTCCG 
CCTATTAAAG AGTTCGCCAG CCGAGCCGAA GAACATATCA AAGGCATGGT AGTACCAGGC 
ACCATCTTCG AAGAATTAGG GTTTAATTAC ATTGGGCCGA TTGATGGTCA CGATGTAAAC 
GGTGTGGTCG ACACATTGAA AAACATGCGC AACATCAAAG GGGCGCAAAT TCTTCACGTG 
GTCACCAAAA AAGGTAAAGG CTATGAGCTA GCCGAGAAAG ACCCGATTAA ATTTCATGCC 
GTGCCTAAAT TCAACCCATC TGCTGATGGT TTGCCTAAGG CTGCGCCGAG CGATCCAACG 
TTTTCAAACA TTTTTGGCCG TTGGTTGTGT GACATGGCAC AACAAGATCC TAATTTAATG 
GCTGTTACCC CTGCCATGCG CGAAGGCTCA GGTATGGTCG AGTTTTCACA AAAATTCCCA 
GCACAATATT TTGACGTCGC CATTGCCGAG CAACACGCAG TGACATTCGC TGCGGGCCTT 
GCCAAAGAAG GCCAAAATGC CGTAGTGGCT ATTTACTCAA CGTTTTTGCA GCGCGCCTAC 
GATCAGCTGA TCCACGATGT GGCTTTGCAA AACTTACCCG TGTTGTTCGC TATTGACCGC 
GCAGGTTTAG TCGGTGCTGA CGGGCCAACG CACCAAGGCG CATTCGATAT CCCATTTTTA 
CGCTGTATTC CGAACATGGT TATCATGACA CCTGCGGATG AAAATGAATG TCGCCAAATG 
CTATACACAG GGCACAAGCT GAACAAACCG GCTGCAGTCA GATACCCAAG AGGTTCAGGC 
ACAGGTGTTA AGCCCGATAA CACCATGCAA GCATTGGAAA TCGGTAAAAG CAGAACCATA 
CGCCAAGGCG AAAAAGTCGC TATATTGAAT TTTGGCGTGT TACTGCCTTA TGCAGAAAAA 
GCCGCTGAAG TACTCAATGC CACTGTGATT GATATGCGCT TCGTCAAGCC CTTGGATACT 
GAAGCGGTGG CCAATGTGGC CAAAAATCAT GAACTGCTTA TTACCCTTGA AGATGGCGCT 
ACCACAGGTG GTGCTGGCGG CGCGGTGGCT GAATACCTAC TGAGTACAGT ACACACCAGT 
CGCTTACTGC AAATCGGTTT GCCTGATGAG TTTATAATGC AGGGCACCCA AACTGAGATG 
TATGCTGAAA TTGGAATGGA TGACGCGGGT ATAATCGCTA AAGCACACAC TTTCTTGGCC 
CAGTAA 

 

Protein sequence

MTLDLAHYPL LALADTPEQL RELPQDKLKQ VAKELRQYLL TSVSQSSGHF ASGLGTVELT 
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDRMPTIRQ KNGLHPFPWP NESEYDTFAV 
GHSSTSISAA VGMAVAAEKE ALGRKVVAVI GDGAMTAGMA FEALNHGGDI DKDMLVILND 
NEMSISENVG ALNSHLARLL TGNFFNSIRD GGKKLLSSVP PIKEFASRAE EHIKGMVVPG 
TIFEELGFNY IGPIDGHDVN GVVDTLKNMR NIKGAQILHV VTKKGKGYEL AEKDPIKFHA 
VPKFNPSADG LPKAAPSDPT FSNIFGRWLC DMAQQDPNLM AVTPAMREGS GMVEFSQKFP 
AQYFDVAIAE QHAVTFAAGL AKEGQNAVVA IYSTFLQRAY DQLIHDVALQ NLPVLFAIDR 
AGLVGADGPT HQGAFDIPFL RCIPNMVIMT PADENECRQM LYTGHKLNKP AAVRYPRGSG 
TGVKPDNTMQ ALEIGKSRTI RQGEKVAILN FGVLLPYAEK AAEVLNATVI DMRFVKPLDT 
EAVANVAKNH ELLITLEDGA TTGGAGGAVA EYLLSTVHTS RLLQIGLPDE FIMQGTQTEM 
YAEIGMDDAG IIAKAHTFLA Q