Gene Patl_1312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1312 
Symbol 
ID4173360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1580146 
End bp1580811 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content48% 
IMG OID638054319 
Productriboflavin synthase subunit alpha 
Protein accessionYP_660892 
Protein GI109897637 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0307] Riboflavin synthase alpha chain 
TIGRFAM ID[TIGR00187] riboflavin synthase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.903669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTACCG GAATAATTGA AGATGTGGGG CACATCGAAT CCTTAACCCC AACGGGCGAT 
GACATTCGCT TGCGCATACG GGTAAATAAA CTGGATATGT CGGATGTGGC CCTTGGCGAC
AGTATCGCCA ATAACGGTGT GTGTTTAACC GTGGTAGACA TGAACTCGAG CGGCTTTAGT
GCTGACGTGT CGCACGAGAC CATCAAGCGC AGCGGTTTTG CCGATTATAA AGCGGGTAGT
AAGGTGAACT TAGAAAAGGC CATGTTACCG ACATCCCGCT TTGGTGGGCA CATCGTCAGC
GGGCATGTTG ATGGTGTGGG CGAAGTCGTT TCCGTCAACC CTGTTGGGCG TTACGTAGAA
ATCTGGGTGC AAGCACCAAA AGATTTAGCC CGTTACTTAG CGGAAAAAGG CTCGATTACT
GTAGACGGTG TCAGCTTGAC GGTGAATGCT GTAGAGGGTG CCAAATTCTT GATTACTCTT
ATTCCCCACA GCCTGGAAGA AACGATTATT GGTGGCTACA AGAAGGGCAC TAAAATTAAT
TTAGAAGTGG ACGTGGTTGC CCGTTACCTA GAGCGATTAA TGCTCGGCGA CAAAGCCGCT
GAAACAGGCC AACAAAAATC AGATATCAGC ATGGTATTTT TAGCTGAAAA TGGCTTTTTA
CGTTAG
 
Protein sequence
MFTGIIEDVG HIESLTPTGD DIRLRIRVNK LDMSDVALGD SIANNGVCLT VVDMNSSGFS 
ADVSHETIKR SGFADYKAGS KVNLEKAMLP TSRFGGHIVS GHVDGVGEVV SVNPVGRYVE
IWVQAPKDLA RYLAEKGSIT VDGVSLTVNA VEGAKFLITL IPHSLEETII GGYKKGTKIN
LEVDVVARYL ERLMLGDKAA ETGQQKSDIS MVFLAENGFL R