| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1311 |
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| Symbol | |
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| ID | 4173359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1578884 |
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| End bp | 1580002 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638054318 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_660891 |
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| Protein GI | 109897636 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.885852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGACGCAAT TCTCTGCGCT TGACGCAAAA ATGATGGCTT TGGCCATCCG CTTGGCTGAA
AAAGGCCAAT ACACAACTTC GCCGAATCCC AATGTGGGCT GTGTTATTAC TGATGCCCAA
GGCAATATTG TCGGCCAAGG CTGGCATCAA AAAGCCGGGA CCCCCCATGC AGAAATTCAT
GCCATTGCCC AAGCGGGTGA GCGCACCAAA GGCGCGACCG CTTACGTCAC ATTAGAGCCG
TGCAATCATC ACGGGCGTAC CGGCCCATGC TCCGAAGCAT TATTAGACGC AGGGGTGAAA
CGCGTTGTTG CCGCTATGGT TGACCCAAAC CCACTCGTAG CCGGCAGTGG TTTACAAAAG
CTCAGTGACG CGGGTGTTCA GGTAAGCAGT GGTTTACTTG AAAGTGAAGC CAAAGCGCTT
AATCGCGGCT TTATCAAACG CATGCAAACA GGCAAGCCTT GGGTTACTGT TAAGCTGGCA
TCAAGCTTGG ACGGCAAAAC CGCGTTAAAT AATGGTGAAA GCCAGTGGAT AACCGGGCCC
TTAGCCCGTG AAGATGTGCA ACGCCACCGA GCGCAGAGTT GCGCGATATT GTCTGGCTCG
GGCACGGTCC TGGCGGATAA CCCTTCATTG AATGTGCGTT ACAGCGAATT GGGTTTTGCA
AGAAATGCGT TAGCAGAAGT GAATTTACGC CAACCTGTGC GAGTTTTGCT CGATGGGCGC
AACCAGATGC GCCCTGATCT GCATTTATTT GCTTTATCGT CTCCCATTGT GATTATCAAT
AGCCAGCCAA ATACAGCTGA ATTTCCAGAT CATGTTGAGC AATATCAAGC CCAATCAAAC
GGTGCGCAAC TTGACCTGCA AGATGTAATG AAACACCTTG GCCAGCGCGG GTTTAACCAT
ATATGGGTAG AGGCAGGGGC GAAGCTTGCA GGGGCGTTAT TACAGAATAA ACTGATAGAT
GAATTGATTT TGTACCAAGC GCCCAAACTA TTAGGAGATA AAGGCCGAGA TTTATTTGCT
GTGGACGAAT TAACCCAAAT GCAGCAAGCT TTTGAATTAC AATGGCAGGA TGTACGCCAA
GTCGGCCCAG ATTTAAAGCT GACGGCGCGC TTTACATAA
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| Protein sequence | MTQFSALDAK MMALAIRLAE KGQYTTSPNP NVGCVITDAQ GNIVGQGWHQ KAGTPHAEIH
AIAQAGERTK GATAYVTLEP CNHHGRTGPC SEALLDAGVK RVVAAMVDPN PLVAGSGLQK
LSDAGVQVSS GLLESEAKAL NRGFIKRMQT GKPWVTVKLA SSLDGKTALN NGESQWITGP
LAREDVQRHR AQSCAILSGS GTVLADNPSL NVRYSELGFA RNALAEVNLR QPVRVLLDGR
NQMRPDLHLF ALSSPIVIIN SQPNTAEFPD HVEQYQAQSN GAQLDLQDVM KHLGQRGFNH
IWVEAGAKLA GALLQNKLID ELILYQAPKL LGDKGRDLFA VDELTQMQQA FELQWQDVRQ
VGPDLKLTAR FT
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