| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1294 |
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| Symbol | |
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| ID | 4173342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1555872 |
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| End bp | 1556762 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638054301 |
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| Product | protoheme IX farnesyltransferase |
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| Protein accession | YP_660874 |
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| Protein GI | 109897619 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
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| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTAA AACGTTATAT CAACATCACT AAGCCCGGCA TCATCATGGG TAATTTAATC
TCTGTTGCCG GTGGTTTTTT GCTCGCCTCG CGAGGGGAGG TTGACGGGTT GTTGATGCTC
ATGACGGTGT TAGGTTTGTC GCTCGTGGTG GCCTCGGGTT GTGTGCTCAA TAATTGTATT
GATACGGACA TTGACGCCAA AATGCAGCGC ACCCGCAATC GCGCTACTGT CACAGGAGAT
GTGTCCATTG CACGTGCGCT GCAATTTGGT CTGGCCTTGG CGGTGCTCGG TTTTGGTTTG
CTTATTCGTT ATACCAATAG TATTGCGGTG GGTTTCGCTG TACTGGGTTA CGCAGTATAT
GTGGGCGTGT ATAGCTTATA TATGAAACGC AAATCAGTGT ATGGCACGTT AGTGGGCAGT
TTGTCAGGCG CGGTGCCACC TGTGGTCGGT TACTGCGCCG CAAGTGGCCA ATTTGATGCC
GGTGCCGCTA TCCTATTATT GATGTTTAGT TTGTGGCAAA TGCCGCATTC TTACGCCATC
GCCATCTTTC GTTTTGACGA TTACGCCAAA GCCAATATAC CGGTATTGCC AGTAGCAAAG
GGGATCGCAA AAACCAAATT GCATATTGTA TTGTATATCG CTGTATTTGC GATTGTCAGC
GCGCTTCTGC CGCTAAGCGG TTACACCGGG CTGACGTTTA TGGCGGTGGC TTGTGTGACT
AGCTTGTGGT GGCTGTTTAT GGCATTGCGT GGCTATCGCA AAAACATCGA GTTAGTGGTT
TGGGCAAGGC AAGTATTTGG CTTTTCTATC TTAACCATCA CTGCTCTTAG TATCGGCATG
GCCTTTGATT TTCAGGCCTT GCCACCGAGT TTGCTAGTGA TGCTTAGCTG A
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| Protein sequence | MKVKRYINIT KPGIIMGNLI SVAGGFLLAS RGEVDGLLML MTVLGLSLVV ASGCVLNNCI
DTDIDAKMQR TRNRATVTGD VSIARALQFG LALAVLGFGL LIRYTNSIAV GFAVLGYAVY
VGVYSLYMKR KSVYGTLVGS LSGAVPPVVG YCAASGQFDA GAAILLLMFS LWQMPHSYAI
AIFRFDDYAK ANIPVLPVAK GIAKTKLHIV LYIAVFAIVS ALLPLSGYTG LTFMAVACVT
SLWWLFMALR GYRKNIELVV WARQVFGFSI LTITALSIGM AFDFQALPPS LLVMLS
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