| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1288 |
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| Symbol | |
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| ID | 4173336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1550396 |
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| End bp | 1551031 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054295 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_660868 |
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| Protein GI | 109897613 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACCC CAAGTGTTAT CCCAGCCAAA CAAATACGCA GTCAAGACAC TCAGCGAAAA
CTTATGGCTG CTGTGCACCA CTGCCTGCAA AGTAAATTTT TTGAGCACAT CAGCATCAAA
GAATTGTGCG ATCACGCTGG CGTTTCGGTT GGTACCTTTT ATCGGCGCTT TAAAAACAAA
GAAGCCCTAC TACCGCTGCT ATACCAAGAT TTTGGCCGCG AGCTTACCCA GTGGATTGAA
CAATTAGAGC AGATGCCGTT TGAGACGTTA GCTGAAGCAG TGAAAGAGAT AACCCGCAAG
ACCCATGATT TTTTCATCGC CAATCGTAGC TTGTTTCGCA CCATTCACCT TAATTCACGC
TTGCATACCC ACATTGTGGC AGGTGAAGCT TTAATAGACA GACAAGTTAT GTATAAGCGT
ATGAGTCAGA TATTGCTCAG GTTCAGTGAT GACATTAATG CTGCTGATAG ATCATCGGTA
GCGAATATGG TGATCTTCAC CATGATCACT GCTCTGCTCG ATAAAGTGCT GTACCCCGAC
ATTACCCCAT CGATCGCATG CGAGTTAGAT TCTGTCGCTT TATGCGATGA ACTAACAAAA
ATGTTGCTTT TGTATTTGGG TCACTCAAAC GTGTAG
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| Protein sequence | MPTPSVIPAK QIRSQDTQRK LMAAVHHCLQ SKFFEHISIK ELCDHAGVSV GTFYRRFKNK
EALLPLLYQD FGRELTQWIE QLEQMPFETL AEAVKEITRK THDFFIANRS LFRTIHLNSR
LHTHIVAGEA LIDRQVMYKR MSQILLRFSD DINAADRSSV ANMVIFTMIT ALLDKVLYPD
ITPSIACELD SVALCDELTK MLLLYLGHSN V
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