Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1280 |
Symbol | |
ID | 4173291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1537769 |
End bp | 1539133 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638054287 |
Product | DNA repair protein RadA |
Protein accession | YP_660860 |
Protein GI | 109897605 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1066] Predicted ATP-dependent serine protease |
TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAAAC GTAAAACCGC CTATGTCTGT AGTGACTGTG GCGCAGAATT TCCGCGCTGG CAAGGACAAT GTAATGACTG CAATGCTTGG AATACCATCA CAGAATTTGT GGTGAGCCCT GCTCGCAGCC AGCCTGAGCG CAATTTGCGC GGCTACGCCG GTCAAACTGG GGCCAAAATT GAGACCCTTA ACAGCATTGA TGTGGCTGAA TTACCGCGCT TTACTTCAAG CTTTAGTGAG CTCGATAGAG TATTAGGCGG GGGTATCGTG CCGGGCAGTG CAATTTTGAT TGGCGGTTCT CCTGGAGCAG GCAAAAGTAC CTTGTTGCTA CAAGTCATGT GCCAACTAGC AGCGCAGCGC ACTGCGCTAT ATGTCACGGG GGAGGAATCG CTGCAACAAG TTGCTATGCG CGCTCAGCGC TTAAATCTAC CTAGCGATAA GCTGAATATG CTGGCCGAAA CCAGTGTTGA AACTATCTGT GAATTAGCAT TAACCCTCAA CCCCAAAATT ATGGTGATTG ACTCCATTCA GGTGATGCAT GTGGCCGATG TGGCATCTGC ACCCGGTAGC GTTTCGCAAG TAAGAGAAAG CGCCGCATAT TTAACTCGCT TTGCAAAGCA GCACCATATT GCCATGCTGT TAGTGGGGCA TGTTACGAAA GATGGCAGTC TGGCTGGGCC CAAAGTGCTA GAGCACTGTA TTGATTGCTC CATGATGTTA GAAGGGGAAA GTGACAGCCG GTATCGCACG TTGCGTAGTC AGAAAAACCG CTTTGGTGCT GTGAACGAAT TGGGTGTGTT TGGCATGACC GAAAGAGGAT TAAAGGAAGT GAGTAATCCT TCTGCCATCT TTTTAAGTCG AGGAGAAGAG CAATCTCCTG GCAGTATTGT TATGGTGGTA TGGGAAGGCA CTCGCCCATT GCTGGTGGAA ATACAAGCAT TGGTGGATTA TTCACAGACC GCAAACCCGC GTCGTGTCGC TGTTGGTCTT GAGCAAAACC GAATGGCGAT GCTTTTAGCA GTATTGAATC GACACGGTGA TGTGCAGATG AACGACCAAG ACGTTTTCGC CAATGTCGTC GGCGGCGTAA AGGTCGCAGA AACCAGTGCT GATTTAGCGC TTTTACTATC CATTGTTTCG AGTTTTAGAA ATAAGACCCT TGATTCACAG TTAATTGCAT TTGGCGAAGT GGGACTTGCT GGTGAAATAC GCCCCGTGCC TAATGGCTCA GAACGGATCA GCGAAGCAGC AAAGCATGGA TTCAAGCGAG CTATCGTGCC AAAAGCCAAT ATGCCAAAAC AAAACATTAA TGGGATCGAA GTGATCGGGG TATCTCGTTT AAGTGAAGCA CTTGAGGTGC TTTAA
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Protein sequence | MAKRKTAYVC SDCGAEFPRW QGQCNDCNAW NTITEFVVSP ARSQPERNLR GYAGQTGAKI ETLNSIDVAE LPRFTSSFSE LDRVLGGGIV PGSAILIGGS PGAGKSTLLL QVMCQLAAQR TALYVTGEES LQQVAMRAQR LNLPSDKLNM LAETSVETIC ELALTLNPKI MVIDSIQVMH VADVASAPGS VSQVRESAAY LTRFAKQHHI AMLLVGHVTK DGSLAGPKVL EHCIDCSMML EGESDSRYRT LRSQKNRFGA VNELGVFGMT ERGLKEVSNP SAIFLSRGEE QSPGSIVMVV WEGTRPLLVE IQALVDYSQT ANPRRVAVGL EQNRMAMLLA VLNRHGDVQM NDQDVFANVV GGVKVAETSA DLALLLSIVS SFRNKTLDSQ LIAFGEVGLA GEIRPVPNGS ERISEAAKHG FKRAIVPKAN MPKQNINGIE VIGVSRLSEA LEVL
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