| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1264 |
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| Symbol | |
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| ID | 4173275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1513248 |
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| End bp | 1516715 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054271 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_660844 |
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| Protein GI | 109897589 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGATT GTAAATTTGT ACACTTGAGA GTCCACAGCG ACTATTCAAT GCTAGACGGT
TTGAATAAAG TAAAACCGCT GATTGCCCAT GTAAAATCAC TCAATATGCC TGCGGTTGCG
TTAACCGATC AGATGAACAT GTGTGGCCTG GTAAAATTTT ATGAGCAGGC CCATTCAAAC
GGCATTAAAC CCATTATTGG TACGGACTTC TGGGTGCAGT CAGATGCCCT AGAAGATCAT
GTTTTTCGCT TGACGTTGTT AGCCGCTAAT AACAAAGGCT ATAAAAATAT CACTTTGCTC
ATCTCTAAAG CGTATCTGCG CGGCAGTGTG CAAGACAAAG CCGTTATAGA CCAAGAATGG
TTGGTTGAGC ATAGTGAAGG GGTGATCATC CTTTCAGGTG GCCGTATGGG CGACTTAGGG
GTTTATCTAA CCAAAGGCAA TGTTGGCCTA GCTGAAAAGG CTACCGCCTT TTACCAGCAG
CATTTTCCTG ACCGTTTCTA CTTAGAATTA ACACGCACAG GGCGCTTAGG CGAAGAAGAC
TATATTCACC GAGCGGTGGA GTGGGCGGGG CAACATGACT TGCCCGTAGT GGCCACAAAC
GAAGTGTGCT TTATCTCACC TGATAACTTT GAAGCGCACG AAATTCGCGT TGCCATTCAT
GATGGTTACA CACTGAACGA TCCACGTCGT CCTAAGTTGT ACAGTGAACA ACAATACATG
CGCACCAGCG AGGAAATGTG TGAGCTATTT GCCGACATTC CCCAAGCGAT TGAGAACACA
GTTGAGATTG CCAAGCGTTG TAATGTATCA GTACTACTAG GCACTTATTT CCTACCAGAT
TTCCCTACGG GCGATATGTC CATCGCAGAC TTCTTAGTAA AAGTATCTGA AGAGGGGTTA
GAAAAACGCT TAGCGTTTCT TTTCCCTGAC GAAGAAGAAC GCCTTGCTAA ACGCCCAGAA
TACGATGAAC GATTAAAGAT TGAGTTAGTG GTAATCAACC AAATGGGATT TCCCGGTTAC
TTCTTGATCG TAATGGAATT TATTCAGTGG AGTAAAGATA ACGGTATTCC AGTTGGTCCG
GGACGAGGGT CAGGTGCTGG TTCACTGGTG GCATATGCAC TAGGGATAAC GGATTTGGAT
CCGCTGGAAT TTGATTTGCT GTTCGAGCGA TTCTTGAACC CTGAGCGGGT TTCCATGCCG
GATTTCGACG TCGATTTCTG TATGGACAGA CGCGACGAAG TGATTGATCA CGTTGCTGAA
ATGTACGGTC GTGATGCGGT ATCGCAAATT ATCACATTTG GTACCATGGC TGCGAAGGCC
GTTGTGCGCG ACGTTGGGCG AGTTTTGGGT CACCCTTACG GCTTCGTTGA TCGTATTTCA
AAGCTTATTC CACCTACGCC AGGTATGACG TTAACCAAAG CATTTGAAGA AGAGCCGCGA
TTACCGGAGC TTTACGCCTA CGATGAAGAA GTCAAAGATC TCATCGATAT GGCGCGAATT
CTTGAAGGGG TAACTCGTAA CGCGGGTAAA CACGCCGGTG GTGTGGTTAT CGCGCCAGAT
AAAATTACCG ATTTCGCGCC CTTATATTGT GATGATGAGG GGAAAAACCC AGTCACGCAA
TTTGATAAAA ATGATGTTGA AACGGCAGGT CTGGTTAAGT TTGATTTCTT GGGCTTACGT
ACACTGACCA TTATTCAGTG GGCCATCGAT ATGATTTCCG CCGGTAAAGG CGTCGATATC
GATATCTTGG CGATTCCAAT GGATGACAAG AAATCCTTTA AACTCTTACA GCGCTCTGAA
ACCACAGCCG TTTTCCAGCT TGAATCCCGC GGTATGAAGG ATTTGATCAA GCGACTTCGA
CCCGATAGTT TTGAAGATAT TATCGCACTG GTAGCCCTAT TTAGACCGGG TCCTTTGCAA
TCAGGCATGG TGGACAACTT TATCGACCGT AAACATGGCC GAGAAGCAAT CTCCTATCCC
GATGCCACAT ACCAACATGA ATGCTTGAAA GAAATTTTAG AGCCGACATA CGGCATTATC
TTGTATCAAG AACAAGTTAT GCAGATAGCT CAGGAAATGT CTGGGTATAG TTTGGGTGGG
GCAGATTTAC TTCGCCGAGC TATGGGTAAG AAAAAGCCCG AAGAAATGGC CAAACAGCGA
GAGTCATTTG AGACCGGCGC CAAAAACAAC AACATTGACC CTGAGTTGGC GATTAAAATC
TTCGATCTGG TAGAAAAGTT CGCTGGGTAT GGTTTTAACA AATCTCACTC TGCTGCTTAT
GCCTTGGTCT CTTATCAAAC CCTTTGGTTA AAAACCCATT ACCCTGCTGA ATTTATGGCG
GCGGTAATGT CCGCTGATAT GGACAACACA GATAAAATCG TGACCTTAGT CGACGAATGT
CAGCGAATGG GAATTACCTT ATTGCCACCT GATGTCAATG CAGGTAGCTA CAAGTTTACC
GTTGATAGCG AGGGGCGAAT TGTTTATGGC ATCGGAGCCA TCAAAGGTGT GGGGGAAGGC
CCTATAGCCG CGATCATTGA AGCGCGGGAA AACCACGAAA AATTCACAGA CCTATTCGAT
TTCTGTGCAA AAGTGGATAC TAAACGGATC AATAAGCGAG TGCTTGAAAA ACTCGTTTAC
GCTGGCGCAC TGGACAACCT TGGGCCACAT CGAGCGTCTA TTATGGCCAC CTTACCGGAA
GCAATATCTG CCGCAGATCA ACACGCTAAA GCCGAAGCCC ACGGGCAAAG TGATATGTTT
GGCCTGCTAA CCACAGAGCC TGAGCAAGTG GAGCAAGCGT TTGCTAAAGT GCCACATTGG
GCAGAGAAAG TCTGGTTAGA CGGCGAAAAG GTCACATTAG GGCTTTACCT AACGGGACAC
CCAATTAACC AATATGCCCA AGAAATTAAA CATTACTGTA CGGGTCGCTT GATTGATCTC
AAACCGACCC ATAAAGATGT CGTATCATAC GCGGTAGGGT TAGTTATTGG CGTACGGGTG
ATGACCAATA AACGAGGTCG ACGTTGGGGC ATTGTCACAT TAGATGATAA AAGTGCTAGG
ATAGATGTAC GTTTTTTCCC CGATCTGTTT GAACAATACG AGGAAATACT GCAATCTGAC
CGAATATTGG TGGTAAGTGG ACAGGTCAGC TTTGATGAAT TTTCCGGGGG CAATACAATA
GGCGCCCGCG ACGCTATGGA CATAGTTCAG GCGAGGGAAA AGAACGCAAA ATGGTTAAGT
ATGCAGTTTG AATCGAGCTG GTGTAATGCC TCAACACTCG CTAAACTGCA AGCAATATTA
GCGCCTTATC AAGGCGGAAG CTGTCCGGTA CAAGCCCATG TTGTGCATCC GGATGCCGAG
GTAACATTAG CGTTAGGTGC CCAGTGGTAC GTTACCCCTG AGGATCAGTT ACTTTTTGAA
TTACAGCAGC AGTTCGGTAA AGAGCATGTA GAGCTGGTGT TTCATTGA
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| Protein sequence | MSDCKFVHLR VHSDYSMLDG LNKVKPLIAH VKSLNMPAVA LTDQMNMCGL VKFYEQAHSN
GIKPIIGTDF WVQSDALEDH VFRLTLLAAN NKGYKNITLL ISKAYLRGSV QDKAVIDQEW
LVEHSEGVII LSGGRMGDLG VYLTKGNVGL AEKATAFYQQ HFPDRFYLEL TRTGRLGEED
YIHRAVEWAG QHDLPVVATN EVCFISPDNF EAHEIRVAIH DGYTLNDPRR PKLYSEQQYM
RTSEEMCELF ADIPQAIENT VEIAKRCNVS VLLGTYFLPD FPTGDMSIAD FLVKVSEEGL
EKRLAFLFPD EEERLAKRPE YDERLKIELV VINQMGFPGY FLIVMEFIQW SKDNGIPVGP
GRGSGAGSLV AYALGITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE
MYGRDAVSQI ITFGTMAAKA VVRDVGRVLG HPYGFVDRIS KLIPPTPGMT LTKAFEEEPR
LPELYAYDEE VKDLIDMARI LEGVTRNAGK HAGGVVIAPD KITDFAPLYC DDEGKNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIIQWAID MISAGKGVDI DILAIPMDDK KSFKLLQRSE
TTAVFQLESR GMKDLIKRLR PDSFEDIIAL VALFRPGPLQ SGMVDNFIDR KHGREAISYP
DATYQHECLK EILEPTYGII LYQEQVMQIA QEMSGYSLGG ADLLRRAMGK KKPEEMAKQR
ESFETGAKNN NIDPELAIKI FDLVEKFAGY GFNKSHSAAY ALVSYQTLWL KTHYPAEFMA
AVMSADMDNT DKIVTLVDEC QRMGITLLPP DVNAGSYKFT VDSEGRIVYG IGAIKGVGEG
PIAAIIEARE NHEKFTDLFD FCAKVDTKRI NKRVLEKLVY AGALDNLGPH RASIMATLPE
AISAADQHAK AEAHGQSDMF GLLTTEPEQV EQAFAKVPHW AEKVWLDGEK VTLGLYLTGH
PINQYAQEIK HYCTGRLIDL KPTHKDVVSY AVGLVIGVRV MTNKRGRRWG IVTLDDKSAR
IDVRFFPDLF EQYEEILQSD RILVVSGQVS FDEFSGGNTI GARDAMDIVQ AREKNAKWLS
MQFESSWCNA STLAKLQAIL APYQGGSCPV QAHVVHPDAE VTLALGAQWY VTPEDQLLFE
LQQQFGKEHV ELVFH
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