Gene Patl_1263 details

Gene Information

• Locus tag: Patl_1263
• ID: 4173274
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1512654
• End bp: 1513247
• Gene Length: 594 bp
• Protein Length: 197 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638054270
• Product: ribonuclease H
• Protein accession: YP_660843
• Protein GI: 109897588
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0164] Ribonuclease HII

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCAGT TAATTGCAGG TGTCGATGAA GTTGGCCGCG GGCCCTTGGT GGGCGATGTG 
GTAACCGCCG CTGTTATCCT TGACCCAGCC AAACCGATTG CCGGGTTAGC AGATTCAAAG 
AAAATATCAG AGAAAAAACG TCTCGCCCTG TTTGATATCA TCATGCAGAA CGCATTAGCG 
GTCTGTGTAG GCAGAGCGTC ACCGCAAGAG ATTGACGAGT TAAATATCCT GCATGCCACC 
ATGCTTGCTA TGAAGCGAGC AGTGCAAGGG CTAGCAACCC AGCCCACGTT TGTGCGCGTA 
GACGGTAATC GTTGTCCTAA TTGGGATTAT GCCAGTGAAG CGGTGGTAAA AGGTGATAGC 
CTATTTGCTG AAATTTCAGC GGCTTCAATT ATTGCGAAAG TGACCAGAGA TGCGGAAATG 
AGCGAGTTAC ACAATGCTCA CCCTGAATAC GGTTTCGCTC AGCACAAGGG ATACCCCACA 
AAAGCGCACC TAGAAAAACT GGCTGAACTT GGCCCTTTAT CTCAGTACCG AATGAGCTTC 
AAACCCGTGC AATTATCGTT AATGCAACGT GGCGGGCAGT TGGCAGGAAA CTAA 

 

Protein sequence

MTQLIAGVDE VGRGPLVGDV VTAAVILDPA KPIAGLADSK KISEKKRLAL FDIIMQNALA 
VCVGRASPQE IDELNILHAT MLAMKRAVQG LATQPTFVRV DGNRCPNWDY ASEAVVKGDS 
LFAEISAASI IAKVTRDAEM SELHNAHPEY GFAQHKGYPT KAHLEKLAEL GPLSQYRMSF 
KPVQLSLMQR GGQLAGN