| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1257 |
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| Symbol | |
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| ID | 4173268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1506102 |
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| End bp | 1508576 |
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| Gene Length | 2475 bp |
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| Protein Length | 824 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054264 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_660837 |
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| Protein GI | 109897582 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00322017 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTTA AACAGTTAGT TGCTGCAGGA TTGATGTTAT CCGTTGCCAA TATGGCAAAG
TCGGCCCAAG AAAGTGAATT TGTCGTTTCT GATATTAAAG TCGAAGGTCT GCAACGTGTA
GCCCTTGGTG CGGCATTAAC CTACTTGCCG GTCAAAGTCG GTGATGAAAT GAATAGCTTC
CGTATAGCAC AGGCTATTCG CTCATTATAT GCATCAACGC ATTTCGAGAG CATTGAAGTG
CTGCGTGACG GCGATGTACT GGTGGTCAAG GTGAAAGAGC GCCCCACTAT CAGTAATATT
ATTCTTGAAG GCAATGACGA CATCAAAGAT GAGCAGCTAC AAGAAAGTTT AGACGGCAGC
AATATTCGTT TAGGTGAGCC ACTGGATAAA ACCGTGCTGA CTTCTATCGA AAATGGCTTA
AAAGACTTCT ACTACAGTAT TGGTAAATAT AATGCCGATG TAAGTGCGAT CATTACACCT
TTGCCACGTA ATCGTGTTGA CCTAAAGCTG CTTTTCGAAG AGGGCGACGC CGCCAAAATT
GAGCAGATCA ACATTGTTGG TAACACCATT TTTGACGACG CTACTTTGTT CGAACAAATG
GAACTGAAAT TCGATGCCCC ATGGTGGGAT TTCCTATCCG AAACCCGGTA TCAGAAACAG
ACCCTTACCG GTGATATGGA AACGGTCACA AGCTATTACA AAGACCGAGG CTATCTGAAG
TTCGATATTG AATCGACGCA AGTATCCATG ACGCCTGAGA AAGCGGGTAT ATACGTCACC
TTGAATATTG AAGAAGGCGA GCAGTATAAA GTTTCTGAAG TGGAATTGGT CGGTGAGTTA
TTAGGTCATG AGGATTACTT AAAGCTCGTA TTGCCTATTA CGCCAGGGGA GTTATATAAC
CAGGCTGAAG TAACGTACAC AGAAGAGTTT ATCAGCAAGT ATTTTGGTCG CTTTGGTTAC
GCTTATCCGA CGGTTACCAC CATTCCTGAT ATTAATGAAG AAGATAAAAC GGTTAAATTG
ACCTTATCCG TGGACCCCGG CAAACGCATT TACGTTCGTC GTATTAACTT CGAAGGTAAC
ATTGGCACTG CTGATGAAGT ATTGCGTCAG TCAGTGACAC AAATGGAAGG TGCATGGCTA
TCAAATGCAA CGCTAGAATC TTCGAAGAAT GCACTTTCTC GCTTAACCTA CATGGAATCA
GTTGATTTTG AAACGGTTCG CCTGCCTGGC GAAGACGACA AAGTTGATGT TAACTTCAGC
GTAAAAGAGC AAGCTTCTGG TTCATTCAAT GCCGGGATCG GTTACGGTGA TAGAACCAAG
CTGAGCTTAC AAGCGGGTAT CCAACAAGAT AACTTCTTAG GTACAGGTAA ACGTATCGCG
CTTAACTTAA GTACCACGTC ATATCAAAAA AGTGCTCAGA TTTCTTATAC AGACCCGTAT
TTCACCATCG ATGGTATCAG CTTAGGTGGC TCGGTTGGCT ACAGCGAGTT TGATGGAGAA
AGCGCTGGTT TTATTCAATA TAACTCTAAA CAATATTCAG TTGGCGCAAA CGTCGGTTAT
CCTATTGATG AGTTCAACCG CATTAACTTT GGTTTGACCT ACAGTAATGT TGAGTTGTTC
CAAAGCACTT CTTACGAACA GACAACCCGC TTTTATAATC AGTTTGTGGA TGAAAGCAAC
CCTGATGATT CTATTAAATA CGATAGCTTC TTAGCGTCAG TTGCCTGGAT CCGCTCAACG
CTAAACCGTG GTGTTTTTCC AACGGCTGGT TCGTCGCAAC GTGCGTCGTT CAGTATCACC
ACGCCGAATT CTGACGTTAA CTACTTTAAA ACCGAAGTGG ATACCAAGTT TTATTTCCCA
TTGTCTCGTA ACCAGCGTTG GTCGTTCTTG GCTCGCTTGA AGTTAGGTTA TGGTAACGGT
TATGGCACCG CCAATGGTGT AGATCAAATC TTACCGTTTA ACCAAAACTT CGGTGCTGGT
GGTAATGATT CACTGCGCGG CTTTGAAAAC AACACTGTTG GACCTCGTGG TGTGCAGCTT
ACCCCTTCAG TCATCCGAGA TATTGACGGC AATATTATTT ACGGCAGCCC AGTTAACGAC
ACTGTGACTA TTTCGTCTCG TTCGCTTGGG GGCAACGCGA TGATCTTAGG GGGAGTCGAG
TTAATCGTGC CTACTCCGTT TGTAGAAGCT GACTTCGATA ATTCGGTACG TACTAGCTTG
TTCGTGGATG TAGGTAACGT TTGGGATACC GAATTTAGGT ATGACCGTTA TAAAGATTTA
ACGCTTAATC AACAGTTTAA CAACGATCCA TTAGAAGATT ACAGTGATTA CAAGTTGTAT
AGAGCTTCTG GTGGTCTTTC TGTACAATGG CTGTCGCCTA TGGGACCTAT GGTATTCAGC
TTCTCTAAAG CGATTGAATC AAGAGAAGGG GATGACACGA AGTTTTTCTC TTTTAACATT
GGTCAAACAT TCTAA
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| Protein sequence | MKFKQLVAAG LMLSVANMAK SAQESEFVVS DIKVEGLQRV ALGAALTYLP VKVGDEMNSF
RIAQAIRSLY ASTHFESIEV LRDGDVLVVK VKERPTISNI ILEGNDDIKD EQLQESLDGS
NIRLGEPLDK TVLTSIENGL KDFYYSIGKY NADVSAIITP LPRNRVDLKL LFEEGDAAKI
EQINIVGNTI FDDATLFEQM ELKFDAPWWD FLSETRYQKQ TLTGDMETVT SYYKDRGYLK
FDIESTQVSM TPEKAGIYVT LNIEEGEQYK VSEVELVGEL LGHEDYLKLV LPITPGELYN
QAEVTYTEEF ISKYFGRFGY AYPTVTTIPD INEEDKTVKL TLSVDPGKRI YVRRINFEGN
IGTADEVLRQ SVTQMEGAWL SNATLESSKN ALSRLTYMES VDFETVRLPG EDDKVDVNFS
VKEQASGSFN AGIGYGDRTK LSLQAGIQQD NFLGTGKRIA LNLSTTSYQK SAQISYTDPY
FTIDGISLGG SVGYSEFDGE SAGFIQYNSK QYSVGANVGY PIDEFNRINF GLTYSNVELF
QSTSYEQTTR FYNQFVDESN PDDSIKYDSF LASVAWIRST LNRGVFPTAG SSQRASFSIT
TPNSDVNYFK TEVDTKFYFP LSRNQRWSFL ARLKLGYGNG YGTANGVDQI LPFNQNFGAG
GNDSLRGFEN NTVGPRGVQL TPSVIRDIDG NIIYGSPVND TVTISSRSLG GNAMILGGVE
LIVPTPFVEA DFDNSVRTSL FVDVGNVWDT EFRYDRYKDL TLNQQFNNDP LEDYSDYKLY
RASGGLSVQW LSPMGPMVFS FSKAIESREG DDTKFFSFNI GQTF
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