Gene Patl_1256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1256 
Symbol 
ID4173267 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1504688 
End bp1506040 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content45% 
IMG OID638054263 
Productputative membrane-associated zinc metalloprotease 
Protein accessionYP_660836 
Protein GI109897581 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0750] Predicted membrane-associated Zn-dependent proteases 1 
TIGRFAM ID[TIGR00054] RIP metalloprotease RseP 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000401781 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGGCT TTTTATGGAG TTTAGCGTCG TTCGTTATTG CGCTGGGTAT TTTGGTCGCT 
GTGCACGAGT GGGGACACTT CTGGGTGGCA AGGCGCTGCG GAGTCAAAGT CGAGCGTTTT
TCCGTCGGTT TCGGTAAAGC GCTTTGGCGT CGCACGGATA AGCTAGGCAC TGAATACGTT
ATTGCTGCCA TACCATTAGG TGGTTACGTA AAAATGCTCG ACGAGCGAGT AGACGACGTA
GCAGAAGAAG ATTTGCCTCA CGCTTTTAAT CGTCAGCACG TACTCAAGCG AATTGCTATT
ATCGCTGCTG GCCCGTTAAC CAACTTCATT TTCGCCATAT TTGCTTTATT TGTGATGTAT
CTTATCGGCG TTCAAACTAT CAAGCCGATG CTAGGCGAAA TAAAGCCAGA CAGTATCGCC
AGCCAAGCTG GATTGCTAGA GGGCTCTATC ATCAAGCGAG TGGGAGAGCG AGACACCATC
GATTGGCAAG CGGTGAATCT AGAGCTGATT TCATATATTG GCAATGATAC TCTGCCACTC
ACTATTACAT TGCCAAATAG TCCAGTTGAA CAAACTAAAG TGTTAAATTT GAGCACTTGG
CAATTTGATC CGGACAAAGA CTCCGCAATC GAAAGTTTAG GTTTGTCTGT GTATCGGCCA
GAAGTCTTGA GTATCGTTGG TTTGGTGGCT GAAAAGTCTG CTGCTGAGCA ACTTGGTTTA
AAGGTTGGCG ATAAAATTCA GCAGGTAGAT GGAACTACCA TGGCAAATTG GGAACAAATA
GTCAGTTATG TTGCAAAGCG TCCCAATGCT GATGTTGTTA TTGAGGTGCT AAGAGACGAG
CAGGTTGTGA GGTTGAGCGG CTTGTTGGGC TCGCGCCAAG ATGGTGAAAA TGAGATTGGT
TACTTGGGTG TCAGCCCAAC GTTAGCACCA TGGCCGAAAG GGGTTTTATT CACTCACCAA
TACGGTCTGA TTGATGCTGT TGCCCAAGCG AGCGACAAAA CATGGCGTCT GATGACGCTT
AGCGTCGAAA TGCTAGGAAA GTTAATTACA GGTGATGTGT CGGTTAAAAA CCTCAGTGGA
CCGATTTCCA TTGCCCAGGG TGCTGGGATG AGTGCGAGTT CAGGAATAGT GTATTTTCTG
AGCTTTTTAG CGTTAATTAG CGTCAATTTG GGAATTATTA ACCTTTTACC CATTCCGGTG
CTTGATGGTG GACACTTACT CTATTACTTT ATAGAGCTTT TACGTGGTCG ACCCGTTCCG
GACTCTATAC AAGAGATTGG TTTTAAAATA GGTGGCTTAT TATTACTCCT GTTTATGAGT
ATCGCCATCA TTAACGACAT TACGCGTTTA TAA
 
Protein sequence
MLGFLWSLAS FVIALGILVA VHEWGHFWVA RRCGVKVERF SVGFGKALWR RTDKLGTEYV 
IAAIPLGGYV KMLDERVDDV AEEDLPHAFN RQHVLKRIAI IAAGPLTNFI FAIFALFVMY
LIGVQTIKPM LGEIKPDSIA SQAGLLEGSI IKRVGERDTI DWQAVNLELI SYIGNDTLPL
TITLPNSPVE QTKVLNLSTW QFDPDKDSAI ESLGLSVYRP EVLSIVGLVA EKSAAEQLGL
KVGDKIQQVD GTTMANWEQI VSYVAKRPNA DVVIEVLRDE QVVRLSGLLG SRQDGENEIG
YLGVSPTLAP WPKGVLFTHQ YGLIDAVAQA SDKTWRLMTL SVEMLGKLIT GDVSVKNLSG
PISIAQGAGM SASSGIVYFL SFLALISVNL GIINLLPIPV LDGGHLLYYF IELLRGRPVP
DSIQEIGFKI GGLLLLLFMS IAIINDITRL