| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1253 |
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| Symbol | |
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| ID | 4173264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1501842 |
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| End bp | 1502582 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054260 |
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| Product | undecaprenyl diphosphate synthase |
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| Protein accession | YP_660833 |
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| Protein GI | 109897578 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
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| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.200371 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATTCAG AATCACAATC GACCAGTAAA CTCGTGCCCC AGCACGTTGC AATCATTATG
GATGGCAACG GTCGCTGGGC CAAAAAGAAA GGCAAAATAC GAACATTCGG GCATCGTGCT
GGTGTTAAAG GTGTTCGTGC TTCTGTGTCT TTTTCCCTTA AAAACAACAT CAAAGTTTTA
ACCTTATTTG CCTTTAGTAG TGAAAACTGG AATCGCCCTC AAGAAGAAGT GGGGGTACTA
ATGGAACTGT TCAAAATGGT CTTGAGCAGT GAAGTTAAAA AACTGCACAA AAATAACGTT
AAATTACGTG TTATTGGTGA TACCAGTCGC TTCGACAAAA AGCTGGTTGC ACAAATTCAA
GATGCTGAGA CATTAACTGA AAACAACGAT GGTTTAATTC TCAACATTGC TGCGAATTAC
GGTGGTCGCT GGGATATTCT CAACGCAGCC AAGACGTTGG CTGAGCAGGT CAAAGAAGGC
GCACTCGAAT GTGAACAAAT CGACGAAGCC ATGCTCAACA GTTATACCTG TTGCGCTGAC
CTTCCAGAAC TCGATTTACT CATTCGTACC GGTGGTGAAA CCCGTATTAG CAACTTTTTG
CTATGGCAAG TTGCTTACGC AGAATTGTAT TTTACCGATA CCTACTGGCC GGATTTTAAC
GAAGATGCTT TCCAACTTGC CATCGATAAC TTTGCCGATA GGCAACGCCG CTACGGGATG
ACGGGCGAAC AGGTCAGTTA A
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| Protein sequence | MNSESQSTSK LVPQHVAIIM DGNGRWAKKK GKIRTFGHRA GVKGVRASVS FSLKNNIKVL
TLFAFSSENW NRPQEEVGVL MELFKMVLSS EVKKLHKNNV KLRVIGDTSR FDKKLVAQIQ
DAETLTENND GLILNIAANY GGRWDILNAA KTLAEQVKEG ALECEQIDEA MLNSYTCCAD
LPELDLLIRT GGETRISNFL LWQVAYAELY FTDTYWPDFN EDAFQLAIDN FADRQRRYGM
TGEQVS
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