Gene Patl_1242 details

Gene Information

• Locus tag: Patl_1242
• ID: 4172708
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1488963
• End bp: 1490831
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638054249
• Product: Fe-S protein assembly chaperone HscA
• Protein accession: YP_660822
• Protein GI: 109897567
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR01991] Fe-S protein assembly chaperone HscA

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATTAC TCCAAATTGC AGAACCTGGC CTGAGCGCGG CACCTCACCA ACGTAAACTT 
GCCGTGGGTA TTGATTTAGG CACAACAAAT TCTCTCGTGG CGACTGTTCG CAGTGGTCAG 
GCAGAGACGT TGGGTGACAA CAATAACCAA CACCTTTTAC CTTCAGTGGT AAGTTACACC 
GCTGAGCAAG TGGTGGTGGG TGAGCAGGCT AAGCATGATG CTAGCCTTGA CCCTGCAAAT 
ACCATTGTTT CAGTAAAACG TTTCTTGGGT CGTAGTCTCA ATGATATTCG CCGCAGTTAT 
CCAGACTTGC CTTATGATTT CGATGAGTCA AACCCGAACT CGCCGTTGTT GAATGTTACC 
GGCCGTCAAG TGAATCCAGT TGAGGTGTCA TCTGAAATAC TCACCACCCT GCGTTTACGT 
GCAGAACAGA GCTTGGGTGA AGAGCTAAGC GGCGCTGTGG TAACGGTTCC TGCGTATTTC 
GATGATGCGC AGCGCCAAGG CACTAAAGAT GCCGCGCAAC TAGCGGGATT AAAAGTGTTG 
CGGCTATTAA ACGAACCCAC AGCGGCCGCC ATCGCTTACG GCTTAGACAC TGCCCAAGAG 
GGCGTGATTG CCGTTTATGA CTTGGGTGGC GGCACATTTG ATATATCTAT TTTACGCTTG 
AGCAAAGGGG TATTCGAGGT ATTAGCCACT GGCGGTGATT CGGCATTAGG CGGCGATGAT 
TTTGATCACA TGATTGTTAA GCATTTTCGC CAGCAGCTTG GCCTAGAGGG GGCGTTGTCA 
AAACGTTTGC ATCGGGTCCT ATTGGACAAA GCAAAGTTTG CTAAAGAGTC CTTGAGCGAC 
AATGACACTG TTACAGTGGA TTTTGCCGAT GACGAGCAAA AGCTTCTCAG CTTATCTATT 
AGTCGAGAAA CCTTTCAAGG TTTGATTGCT GACTTAACGA AAAGTACATT ACGCGCGTGT 
CGCAGGGCGC TGAAAGACGC CGAGTTAGAA AAAGACGAAG TGCTAGAAGT CGTCATGGTT 
GGCGGTTCAA CTCGCGTACC TTATGTGCGT GAGCAAGTGG GCGAATTCTT CGGCCGAACC 
CCTTTGACCT CTATTGATCC TGATAAAGTG GTGGCCATTG GCGCCTCTAT TCAAGCTGAT 
ATTCTAGTAG GTAACAAGCC TGACGGTGAA ATGCTGTTAC TGGACGTATT ACCACTGTCT 
CTTGGCTTGG AAACTATGGG CGGTTTGGTT GAGAAAGTCA TTCACCGGAA TACCACTATT 
CCTGTGGCGA AAGCGCAAGA ATTTACGACA TTCAAAGATG GCCAGACGGC TATGATGATC 
CACGTGTTGC AAGGTGAGCG CGAATTGGTT GACGACTGCC GTTCGCTAGC CAAATTCACG 
TTGCACGGCA TACCGCCGAT GGCGGCTGGC GCTGCGCACA TTCGTGTCAC CTTTCAGGTA 
GATGCAGATG GTCTGCTTAA CGTGATGGCG ATGGAGAAAT CCAGTGGCGT TCAAGCTGAG 
ATCCAAGTTA AACCCTCTTA TGGATTAGAC GAGTCACAAA TCAGCGACAT GCTTAAAGCG 
TCCATGCAGA ACGCCACAGG CGACATGCAG GCCCGCATGT TGAAAGAGCA ACAGGTAGAA 
GCTGCAAGAG TACATGAAGC CCTACAAGCT GCGCTGAATG CAGATGGAGC TGAGCTATTG 
AGTGCGGCGG AAATCGGCAC TATTCAAGCT AGCTTAGAGG TATTAGATAT CGCAGGCAAA 
AATGATGATA TCGATGCGAT AAAGCAAGCG ATTAGCGCGG CCGATGCAGC GAGTCAAATA 
TTCGCAGAAA AACGTATGGA TCACTCGATC AAAAAGGCAT TAGCCGGTCA TACGGTCGAC 
AGCATTTAA 

 

Protein sequence

MALLQIAEPG LSAAPHQRKL AVGIDLGTTN SLVATVRSGQ AETLGDNNNQ HLLPSVVSYT 
AEQVVVGEQA KHDASLDPAN TIVSVKRFLG RSLNDIRRSY PDLPYDFDES NPNSPLLNVT 
GRQVNPVEVS SEILTTLRLR AEQSLGEELS GAVVTVPAYF DDAQRQGTKD AAQLAGLKVL 
RLLNEPTAAA IAYGLDTAQE GVIAVYDLGG GTFDISILRL SKGVFEVLAT GGDSALGGDD 
FDHMIVKHFR QQLGLEGALS KRLHRVLLDK AKFAKESLSD NDTVTVDFAD DEQKLLSLSI 
SRETFQGLIA DLTKSTLRAC RRALKDAELE KDEVLEVVMV GGSTRVPYVR EQVGEFFGRT 
PLTSIDPDKV VAIGASIQAD ILVGNKPDGE MLLLDVLPLS LGLETMGGLV EKVIHRNTTI 
PVAKAQEFTT FKDGQTAMMI HVLQGERELV DDCRSLAKFT LHGIPPMAAG AAHIRVTFQV 
DADGLLNVMA MEKSSGVQAE IQVKPSYGLD ESQISDMLKA SMQNATGDMQ ARMLKEQQVE 
AARVHEALQA ALNADGAELL SAAEIGTIQA SLEVLDIAGK NDDIDAIKQA ISAADAASQI 
FAEKRMDHSI KKALAGHTVD SI