| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1239 |
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| Symbol | |
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| ID | 4172705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1487551 |
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| End bp | 1487931 |
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| Gene Length | 381 bp |
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| Protein Length | 126 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054246 |
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| Product | scaffold protein |
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| Protein accession | YP_660819 |
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| Protein GI | 109897564 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0822] NifU homolog involved in Fe-S cluster formation |
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| TIGRFAM ID | [TIGR01999] FeS cluster assembly scaffold IscU |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.351631 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTTACA GCGAAAAAGT AATCGATCAC TACGAAAATC CACGTAACGT AGGTGGTTTT
GACAAGAATG ACCCTAGCAT TGCAACCGGT ATGGTTGGCG CGCCAGCATG CGGTGACGTA
ATGAAATTGC AATTGAAGAT TGGTGCTAAT GGCATTATCG AAGATGCAAA ATTCAAAACT
TATGGCTGTG GCTCGGCGAT TGCGTCTAGC TCACTAGTTA CTGAATGGGT TAAAGGCAAA
TCAATTGACG ATGCCGTGAA GATATCGAAC ATGGACATTG CTGAAGAACT TGCCTTACCA
CCAGTAAAAA TTCACTGCTC TATTTTGGCA GAAGACGCTA TTAAAGCAGC CGTTGAAGAT
TACAAAAAGA AACACCAGTA A
|
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| Protein sequence | MAYSEKVIDH YENPRNVGGF DKNDPSIATG MVGAPACGDV MKLQLKIGAN GIIEDAKFKT
YGCGSAIASS SLVTEWVKGK SIDDAVKISN MDIAEELALP PVKIHCSILA EDAIKAAVED
YKKKHQ
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