| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1231 |
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| Symbol | |
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| ID | 4172697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1481117 |
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| End bp | 1482058 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054238 |
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| Product | protein-export membrane protein SecF |
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| Protein accession | YP_660811 |
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| Protein GI | 109897556 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0282245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTGC TAAACATGAA AGAAACCGTT GGCTTTATGT CGTTGCGCGT TCCCGCAGCG
ATACTATCCG CGTTACTGGT TATCGGCTCT CTGGTATCCC TTGGTGTTAA CCAGCTTAAT
TGGGGTTTGG ACTTCACCGG TGGTACGCAG ATTGAAATGC GATATGAAGG TGTGGCTAAC
TTAGACGCGG TTCGCGCTGA GTTAACTCAA GCCGGCTTTG TTGAGCCTAC AGTGCAAAAC
TACGGTAGCA GTCAAGACAT ACTAATACGC ATTGCTCCAA TGGAAGGCGT GAAGAACGTT
GAAATTGGCG ACAGGGTAGT TGCTGCGTTG CAAGCTGCCG ATCCAAGCGT TGAAAAACGC
GGTATCGCTT TTGTTGGGCC AAATATTGGT GATGAACTTG CAGAACAGGG CGGGTTAGCC
ATGCTGGTTT CTTTGCTTTG TATTCTGGTA TACGTAGCAA TGCGATTCGA ATGGCGTTTT
GCTTTGGGCT CAGTTGTGGC ACTTGCCCAC GACGTGATCA TCACATTAGG TTTGTTCTCA
ATTCTACAAC TGGAATTCGA CTTAACGGTA CTGGCCGCTG TATTGGCAGT AATCGGTTAT
TCTTTGAATG ATACGATTGT GGTATCAGAT AGGATCCGTG AAAACTTCCG TAAAATCCGC
AATTCAGAAA CCGAAGAGAT CATTAATATT TCACTGACCC AGACTTTGAA CCGTACCATT
ATTACCTCGT TAACGACGAT ATTGGTATTG ATGTCATTGT TCTTCTTGGG CGGGGCAACC
ATTCATGGTT TTGCGACTGC GTTACTGTTT GGTGTGATAA TCGGTACGTA TTCGTCTATC
TACGTTGCCA GCTTAGTGGC GCTATGGTTA GGTGTAAGCC GCGAAGACTT GATGCCAACT
GAGATAGAAA AAGAAGGCGC TGACCAAGAG TCAATGCTGT AG
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| Protein sequence | MQLLNMKETV GFMSLRVPAA ILSALLVIGS LVSLGVNQLN WGLDFTGGTQ IEMRYEGVAN
LDAVRAELTQ AGFVEPTVQN YGSSQDILIR IAPMEGVKNV EIGDRVVAAL QAADPSVEKR
GIAFVGPNIG DELAEQGGLA MLVSLLCILV YVAMRFEWRF ALGSVVALAH DVIITLGLFS
ILQLEFDLTV LAAVLAVIGY SLNDTIVVSD RIRENFRKIR NSETEEIINI SLTQTLNRTI
ITSLTTILVL MSLFFLGGAT IHGFATALLF GVIIGTYSSI YVASLVALWL GVSREDLMPT
EIEKEGADQE SML
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