| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1201 |
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| Symbol | |
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| ID | 4172607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1449448 |
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| End bp | 1452204 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638054208 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_660781 |
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| Protein GI | 109897526 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.173975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATCA AAATTTTATC ATCTCTAGTC GTAGTTTCAG CACTTACCCT GATAGGCTGC
GACAGCAAGT CCGCAGAAGA ATACATCGCG AGCGCTAAAG AGCAATATCA GAAAAACGAC
ACGCAAGCCG CTATCATTGA TTTGAAAAAT GCCATCGCTT TAGCGCCCAA AAATAAAGAC
GCGCGCACGA ACTTAGGCCA ATATTACCTT GTCGCGGGGT TATTTGATGA ATCAGAAAAA
GAACTACGCA AAGCTTTAGA GTTGGGCGAA TCCAAAGATT CTGTTTATCC AGCCCTAGTC
AAAGCCATTT ATTATCAAAA TGACTTTGAC CGCCTCATAA GATTAACACA AGATTTTACC
AGTAATGATA CTGAGGTACT TAGCAGTATC TCTTTGTTTA CTTTCTTAGC TAACTTAAAA
AACACCTCTG ATAATGATGC TATTAATACT GATTTTTCAA CATTAATCGG TGACGATAAA
ACATTAGCGC AGGTTTATTT TGATTTCTCT CAAGGCAACT ACGAGCAAGC TAACAGCGAT
TTATCTAGCT TCGTGGATTT AGAACGGAAC AAAATTGAGA AACTCATCGT TACAGGTTTA
ATTAAGGCGC AATTAAAAGA TTACGATTCA GCTATCAGTG CTTTAGAAAA AGTCGTTAAC
TCATCTCCAG AATACTATGT TATTCAGTTT CAATTGGCAG AAATATTGAT AAAAGCTGAA
AAACTTGAGA AAGCTCGAGT ACTTATCGAT GGGCTTTTGA AGGTAAACGC CAGAAGCGCG
TATGCGAATT TACTAATGTC ACAAATTTAC ATTAGCGAAG ATAATTATAA AGAAGCATTC
GATGCAGCTG AGTTTGCGAT ACAAAACGGT ATTAATAGTA CGCAAAGTAA TCTCCTTGCT
GGTATCAGTG CTTACAAAAT TGAGCGAACT GAAAGTGCTT ACAAATATTT ATCAAGAGCT
TCTAGAAATA TACCTCGCGA TCATATGGCC AATAGATTAT TGGCTGATGT TAAAATTAGA
TTAGGTGAAA CTGATAATTT AGCTCAACTG CTTGAAGGTA TCTCAGGCCA AGATATTCAG
AAATCAAGCT TACTTGAGAA TGCTGCGATG ATTAAATTCC GAGAAGGAGA CATCGAAGAA
TCTAAAAGTT TGTTCAAACA AGCGAAAGAC GGCGATCCTA ATAATGCGGT AACGCTCTTG
CGAGAAGGAT TGGTAAAACT ATCTTCTGGG GATCAGTCAG GCATAGAGAG TCTAGAGTCA
GCAATTGCGA TTGATGCTAC GTTGAGCGAG GCATGGAGCT TGCTCGCTCA GGCCCATATG
CAGGCGAACG ATTCAGAACA AGCGTTGTCT ATTGCCAAGC GCTGGCAAGA AACAAACCAA
ATAGATGGGT TAGTGCTTGA ATCCTACTTG CTGCAGCAGT TAAACAATAA TGTTGAGGCT
AGAGCAACTC TACAAAAAGT ACTTGAGTTA GCGCCGGATA ATTATCCAGC AATGCGTTTC
TTGATGTTGA TGAATGCTCG CGAAAAGCGT TTTGATGAAG CGCGAACGTT GGCTGAGAAG
CTGTTGCTGT CGTCTAATAA TGCCGAGGGT AAATTTCAGC TAGTCCTAAC CATTATTAAC
CTAGCAATAC AGCAAGATGA CCTTAAGTCT ATCGAGACGC TGCTTCAGTC TTTATTGGAT
AACAGACCTA CTGATGTTGA GGAAGAACCT CTAGAGCTAA AAGTGGGATT AGCAACGATT
TTTAACTATC AAGGTGAATA TCAAAAAGCA TTGACGGTCT TAAAAGACAT CAAAAATCAG
AAAGACTTCT TTGTATTATC TGAATTAGGT CAAACTTATA TAGAGATGGA TGATTTTAGG
AACGCAAAAT TAACTTTTGA GACGCTTGTA AATATCTTCC CGAGAAATAC GCTTAGCTGG
AACAAGCAAA TAAACCTACT TAATCAGTAT GGTTTACATG TTGAAGCAGC AGAGTTAGCT
AGCCGTGCTG AGACTGCTAT CCCGCATGAT CCTCGCCTCA CAGTACTTAA TATTCGAGCA
CTTATTCGAG CGGGAGAAAT CTCTAGAGCA AAACAAAAAA TCGAAAAGAT GAATTCTGAA
GGGCACAGTT CCCCTATGTT TGAGCTATTT AATGGAGAAA TTGCTCTTCA CAATAAAGAA
TATCAGAAAG CGAGTGAGCT CCTCAGCCAT TACTATTCAG AAAATCCATC ATGGGACACG
GCTATCCCTC TTGCGGAAGC CCTTGCGAAA GTGGGTAAGG TTCAACTTGG CGGAAATTAT
TTAGTACAGC AAACGGCGAA AAGGCGAGTT AAGTATAAAA ACATCCATTA CATTGCTGAG
TACTATACTC GAAACGGCGC TCTTGACGCG GCGGAGATAT ATTATAAGGG CTTACTGGAT
ATGAATCCTA AAGACTTTGT AACATTAAAC AATTATTCAG CGCTTGCCAT TAGAAAAGAG
GAAATCCCTC TAGCTATCGA GCTAGCTCAA CAAGCTATTC AGATACAGCC AAACTCCCCT
TATGCTATGG ATACTTTGGG TTGGGCACTG TTTAGAAACA ATCAATTTTC AGACGCGCTA
ACCTATATCA AAAAAGCAAA TGCGGAATTA CCGAAAAACA ATGAAATTAC CCTCCATCTG
ATTGAGCTGT TGATCGCTAC AGGCAGTAAA GATAAAGCTA AAGGGCTTAT CAACCGATTT
AAGCCTGCTA ATGATACTGA GAAAGACACA CTGTCGCGCC TCAGCACCAG TATTTAA
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| Protein sequence | MRIKILSSLV VVSALTLIGC DSKSAEEYIA SAKEQYQKND TQAAIIDLKN AIALAPKNKD
ARTNLGQYYL VAGLFDESEK ELRKALELGE SKDSVYPALV KAIYYQNDFD RLIRLTQDFT
SNDTEVLSSI SLFTFLANLK NTSDNDAINT DFSTLIGDDK TLAQVYFDFS QGNYEQANSD
LSSFVDLERN KIEKLIVTGL IKAQLKDYDS AISALEKVVN SSPEYYVIQF QLAEILIKAE
KLEKARVLID GLLKVNARSA YANLLMSQIY ISEDNYKEAF DAAEFAIQNG INSTQSNLLA
GISAYKIERT ESAYKYLSRA SRNIPRDHMA NRLLADVKIR LGETDNLAQL LEGISGQDIQ
KSSLLENAAM IKFREGDIEE SKSLFKQAKD GDPNNAVTLL REGLVKLSSG DQSGIESLES
AIAIDATLSE AWSLLAQAHM QANDSEQALS IAKRWQETNQ IDGLVLESYL LQQLNNNVEA
RATLQKVLEL APDNYPAMRF LMLMNAREKR FDEARTLAEK LLLSSNNAEG KFQLVLTIIN
LAIQQDDLKS IETLLQSLLD NRPTDVEEEP LELKVGLATI FNYQGEYQKA LTVLKDIKNQ
KDFFVLSELG QTYIEMDDFR NAKLTFETLV NIFPRNTLSW NKQINLLNQY GLHVEAAELA
SRAETAIPHD PRLTVLNIRA LIRAGEISRA KQKIEKMNSE GHSSPMFELF NGEIALHNKE
YQKASELLSH YYSENPSWDT AIPLAEALAK VGKVQLGGNY LVQQTAKRRV KYKNIHYIAE
YYTRNGALDA AEIYYKGLLD MNPKDFVTLN NYSALAIRKE EIPLAIELAQ QAIQIQPNSP
YAMDTLGWAL FRNNQFSDAL TYIKKANAEL PKNNEITLHL IELLIATGSK DKAKGLINRF
KPANDTEKDT LSRLSTSI
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