Gene Patl_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1172 
Symbol 
ID4172578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1413823 
End bp1414668 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content43% 
IMG OID638054179 
Productpolysaccharide deacetylase 
Protein accessionYP_660752 
Protein GI109897497 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR03006] polysaccharide deactylase family protein, PEP-CTERM locus subfamily 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGTCA CAGGTTTAAA TGCGATGACA GTCGATGTGG AAGACTTCTT CCATGTTTCT 
GCGTTTGAGT CAGTTATTAC GCCTGACCAA TGGAAAGATT ATCAACCCAG AGTAGATAAA
AATACACGCA CCCTGCTTGA GATGTTTGCC AAGCATAATG TTAAATCAAC TTTTTTTGTG
TTGGGTTGGG TTGCAGAGAG ATATCCTGAA TTAATAAAAG AAATTCACGC CCAAGGGCAC
GAAATCGCCA GCCACGGGTA TGCGCATAGA CGCGCCACAG AACAAACGCG AGAGCAGTTT
ACGGCTGATG TAACTCGGTC GAAGGAGCAT CTTGAGGATT TGTTAGGGGA AGCTCTTACG
GGCTATCGTG CCCCAAGCTT TTCCATAGGC TACAACAATG AGTGGGCATT TGAGGTATTA
GCTGAACTTG GTTTTAAATA TAGTTCTAGC ACCTATCCTG TGAAACATGA TTTGTACGGT
ACACCGGACT GGCCGCGTTT TGCCTATACG CGCAAAGAAG GCATTATAGA AATTCCAATC
CCTACCCATA AAGTGATGGG CCGGCAAACA CCCATAGGTG GCGGTGGTTA CTTTCGTTTG
TACCCATATA CCTTGACAAA GTCTTTGATT ACCGGCTATC TGAAAAAAGA GAAACAGCCG
TACTCTTTCT ATTTTCATCC CTGGGAAATA GACGCTGATC AACCTCGCAT GACGAATGCA
CCCCTTAAAT CAAGATTTCG TCACTATGTG AACTTGAATA AAACTCAAGG AAAACTGGAG
CGATTACTTA ATGATTTTTC ATGGGACACC ATGAAGAGTG TTTATAATAT TGAAAGCACT
AGCTAG
 
Protein sequence
MPVTGLNAMT VDVEDFFHVS AFESVITPDQ WKDYQPRVDK NTRTLLEMFA KHNVKSTFFV 
LGWVAERYPE LIKEIHAQGH EIASHGYAHR RATEQTREQF TADVTRSKEH LEDLLGEALT
GYRAPSFSIG YNNEWAFEVL AELGFKYSSS TYPVKHDLYG TPDWPRFAYT RKEGIIEIPI
PTHKVMGRQT PIGGGGYFRL YPYTLTKSLI TGYLKKEKQP YSFYFHPWEI DADQPRMTNA
PLKSRFRHYV NLNKTQGKLE RLLNDFSWDT MKSVYNIEST S