Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1172 |
Symbol | |
ID | 4172578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1413823 |
End bp | 1414668 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638054179 |
Product | polysaccharide deacetylase |
Protein accession | YP_660752 |
Protein GI | 109897497 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | [TIGR03006] polysaccharide deactylase family protein, PEP-CTERM locus subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGTCA CAGGTTTAAA TGCGATGACA GTCGATGTGG AAGACTTCTT CCATGTTTCT GCGTTTGAGT CAGTTATTAC GCCTGACCAA TGGAAAGATT ATCAACCCAG AGTAGATAAA AATACACGCA CCCTGCTTGA GATGTTTGCC AAGCATAATG TTAAATCAAC TTTTTTTGTG TTGGGTTGGG TTGCAGAGAG ATATCCTGAA TTAATAAAAG AAATTCACGC CCAAGGGCAC GAAATCGCCA GCCACGGGTA TGCGCATAGA CGCGCCACAG AACAAACGCG AGAGCAGTTT ACGGCTGATG TAACTCGGTC GAAGGAGCAT CTTGAGGATT TGTTAGGGGA AGCTCTTACG GGCTATCGTG CCCCAAGCTT TTCCATAGGC TACAACAATG AGTGGGCATT TGAGGTATTA GCTGAACTTG GTTTTAAATA TAGTTCTAGC ACCTATCCTG TGAAACATGA TTTGTACGGT ACACCGGACT GGCCGCGTTT TGCCTATACG CGCAAAGAAG GCATTATAGA AATTCCAATC CCTACCCATA AAGTGATGGG CCGGCAAACA CCCATAGGTG GCGGTGGTTA CTTTCGTTTG TACCCATATA CCTTGACAAA GTCTTTGATT ACCGGCTATC TGAAAAAAGA GAAACAGCCG TACTCTTTCT ATTTTCATCC CTGGGAAATA GACGCTGATC AACCTCGCAT GACGAATGCA CCCCTTAAAT CAAGATTTCG TCACTATGTG AACTTGAATA AAACTCAAGG AAAACTGGAG CGATTACTTA ATGATTTTTC ATGGGACACC ATGAAGAGTG TTTATAATAT TGAAAGCACT AGCTAG
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Protein sequence | MPVTGLNAMT VDVEDFFHVS AFESVITPDQ WKDYQPRVDK NTRTLLEMFA KHNVKSTFFV LGWVAERYPE LIKEIHAQGH EIASHGYAHR RATEQTREQF TADVTRSKEH LEDLLGEALT GYRAPSFSIG YNNEWAFEVL AELGFKYSSS TYPVKHDLYG TPDWPRFAYT RKEGIIEIPI PTHKVMGRQT PIGGGGYFRL YPYTLTKSLI TGYLKKEKQP YSFYFHPWEI DADQPRMTNA PLKSRFRHYV NLNKTQGKLE RLLNDFSWDT MKSVYNIEST S
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